Colocalization represents the spatial overlap of signal intensities from separate image channels (AF, SHG, and eosin) of matching tissue regions. Quantitative colocalization analysis was performed in ImageJ software (National Institutes of Health [NIH], Bethesda, MD) using Manders coefficients (Mcoeff), a well-established method for assessing the degree of colocalization between 2 images.
28,29 The Mcoeffs, M1 and M2, reflect the degree of bidirectional colocalization between a pair of images. The Mcoeff M1 is computed as the sum of signal intensities in Image 1 having corresponding components in Image 2, divided by the sum of total intensities in Image 1 (
Equation 1). The M2 coefficient is computed similarly, but in the opposite direction, wherein M2 is the sum of signal intensities in Image 2 having corresponding components in Image 1, divided by the sum of total intensities in Image 2 (
Equation 2). Manders values range from 0, indicating no colocalization, to 1, indicating exact colocalization of corresponding ROI in different channels. Each ROI was saved and opened in the Wright cell imaging facility (WCIF) ImageJ colocalization collection (version 1.37b; NIH).
In the example of
Figure 2, Manders colocalization coefficients were calculated between AF-low (ROI 1–3) and SHG-pos (ROI 1′–3′) in corresponding ROI using the Intensity Correlation Analysis plugin. Some caveats were AF-high (
Fig. 2, ROI A–C) regions could not be compared to corresponding SHG-void regions (
Fig. 2, ROI A'–C') as the latter had zero fluorescence (LUT of zero), and would have introduced a zero denominator and meaningless result in Manders analysis. To circumnavigate this, an exact image negative (inverted image) of the SHG image (
Fig. 2, SHG-invert) was created in which pixel gray values were inverted to compute the image negative.
30 In each image negative, pixel gray values were inverted on the same intensity scale without altering the relationship between pixels or regions with positive/negative signal. Regions of AF-high (
Fig. 2, ROI A–C) were then compared to corresponding ROI in the inverted SHG image (SHG-invert,
Fig. 2, ROI A''–C'') having nonzero fluorescence. Paired comparisons were: AF-low/SHG, AF-high/SHG-Invert, Eosin/SHG-Invert, and SHG/Eosin-Invert. Three beams were chosen from two different TM image stacks from different donors. A total of 6 ROI were placed per beam per image acquisition pair, giving a total of 18 ROI analyzed per paired comparison. Image inversion was performed for SHG/AF and SHG/eosin-labeled pairings.