Transduced, mock transduced, and uninfected cells were subjected to mild lysis (extraction of cytoplasmic proteins) or total lysis (extraction of whole cell protein) at 72 hours after infection. For mild lysis, cells were lysed in lysis buffer (10 mM Tris/HCl pH 8.0, 140 mM NaCl, 0.025% NaN3, 1% Triton X-100) and centrifuged at 16,060 × g for 2 minutes to separate cell organelles from the cytoplasmic fraction. Equal volumes of 2x PPPC buffer (100 mM Tris/HCl pH 6.8, 24% glycerol, 8% SDS, 0.02% Brilliant Blue G, 2% 2-mercaptoethanol) were added to the supernatants and samples were boiled for 10 minutes at 95°C.
For total lysis, cells were lysed in 2x PPPC and homogenized by passing through polymeric homogenization columns (QiaShredder homogenizer; Qiagen, Hilden, Germany) by a 2-minute centrifugation at 16,060 × g in order to obtain cytoplasmic and cell organelle constituents. Equal volumes H2O were added and samples were boiled for 10 minutes at 95°C.
The protein samples were electrophoresed by tricine SDS-PAGE on 10% polyacrylic acid (PAA) gels (running buffer: anode 0.2 mol/L Tris base, pH 8.9; cathode 0.1 mol/L Tris base, 0.1 mol/L Tricine, 0.1% SDS) or on 4–12% bis-tris gradient gels (NuPAGE 4–12% Bis Tris Gels; Invitrogen) (running buffer: NuPAGE MES SDS Running Buffer; Invitrogen; 50 mM 2-[N-morpholino]ethanesulfonic acid, 50 mmol/L Tris Base, 0.1% SDS, 1 mmol/L EDTA, pH 7.3), and semidry blotted onto Amersham Hybond ECL nitrocellulose membranes (GE Healthcare, Munich, Germany) at 0.9 mA/cm2 for 1.5 hours. After protein transfer membranes were blocked in 5% non-fat milk in PBS-T and probed with a monoclonal mouse anti-human FGF-2 antibody (clone 3H3, Calbiochem; Merck Chemicals Ltd., Darmstadt, Germany) at a concentration of 0.5 μg/mL in 5% non-fat milk overnight at 4°C, and a secondary polyclonal goat anti-mouse IgG HRP-conjugated antibody (Dako, Hamburg, Germany) at a dilution of 1:1000 for 2 hours at room temperature.
The blots were developed with luminol for enhanced chemiluminescence using the ECL Plus Western Blotting Detection System (GE Healthcare) after blotting from 10% PAA gels or Immobilon Western HRP Substrate (Millipore, Schwalbach/Ts., Germany) after blotting from 4–12% bis-tris gradient gels, documented using an imaging system (LAS-3000; Fujifilm Europe GmbH, Dusseldorf, Germany) and analyzed with Image Gauge (Fujifilm) and Photoshop (Adobe) software. Blotting was repeated four times with cells from four different donors.