Eyes were preserved in 4% PFA (
n = 56), cryoprotected in 30% sucrose overnight at 4°C and embedded in Tissue Freezing Medium (Triangle Biomedical, Durham, NC, USA). Ten-micron thick sections were collected in round on a cryostat (Fisher, Pittsburgh, PA, USA) such that each slide contained representative sections from the entire eye. Slides were rinsed with PBS and incubated at room temperature in normal donkey serum (NDS; 1:20) in 0.1 M phosphate buffer with 0.5% bovine serum albumin and 0.1% Triton X-100 (phosphate buffer plus Triton X-100 [PBT]) for 2 hours. The slides were incubated overnight at 4°C in primary antibody in PBT (
Table), then rinsed with PBS and incubated in the appropriate fluorophore-conjugated secondary antibody (donkey anti-rabbit or mouse-Alexa Fluor 488, 568, or 594; Life Technologies, Carlsbad, CA, USA) for 2 hours at room temperature. Slides were rinsed with PBS, mounted in Vectashield Mounting medium with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI; Vector Laboratories, Burlingame, CA, USA), and imaged on a Nikon Eclipse epifluorescence microscope (Nikon, Melville, NY, USA) or an Olympus FV-1000 confocal microscope (Olympus). Additional slides were labeled for TUNEL with the Milipore Apoptag Detection Kit (Darmstadt, Germany), adhering to the manufacturer's protocol. Slides were mounted with Vectashield Mounting Medium with DAPI and imaged on the Nikon microscope. Images were collected from affected and unaffected regions and therefore were not necessarily from the same eccentricity, thus, retina thickness may vary but the magnification, gain, and exposure settings were held constant.