Mice were either (1) perfused with normal saline and 4% paraformaldehyde, then eyes removed and further fixed in EM fixative (2.5% glutaraldehyde, 2% paraformaldehyde, with 0.025% (wt/vol) CaCl2 in 0.1 M sodium cacodylate buffer, pH 7.4), or (2) perfused with normal saline, and eyes removed and further fixed in EM fixative. Eyes were washed 2 × 10 minutes in 0.1 M sodium cacodylate buffer containing 5% sucrose, postfixed 3.5 hours in 1% osmium tetroxide in 0.1 M cacodylate buffer containing 2% sucrose, washed 1 × 10 minutes in buffer and 1 × 10 minutes in distilled water (DW), and held in 4% uranyl acetate 1 hour in the dark. Samples then were washed 1 × 10 minutes in DW, dehydrated 2 × 15 minutes each in graded ethanols (30%–100%) and propylene oxide, infiltrated in Embed-812 resin (Electron Microscopy Sciences, Hatfield, PA) for 24 hours on a rotator, and polymerized at 70°C for 48 hours. Sectioning was performed on a Leica EM UC7 Ultracut microtome using diamond knives (Diatome, Hatfield, PA). Semi-thin (0.5 μm) sections were stained with 1% toluidine blue in 1% sodium borate. Thin (silver) sections were collected on copper 135 hex grids, poststained with 4% uranyl acetate in 50% (aq.) methanol and Reynold's lead citrate, and then viewed and photographed using a JEOL 1200 transmission electron microscope (JEOL Ltd., Tokyo, Japan). Sections were photographed over a 1.5 to 2 mm area on the side of the optic nerve head that corresponded to the best alignment of photoreceptor outer segments, generally halfway between the optic nerve head and the ciliary body.
For quantitative analysis of EM features, 24 to 36 images were evaluated from 4 to 6 different eyes per group, taken from either fixation condition. Scoring was done as described previously,
14 with the exception of the scoring of basal infoldings, which was modified due to the range of phenotypes observed in these younger animals (see legend in
Fig. 4 for details). A severity score was assigned to each image. Bruch's membrane thickness was determined by averaging the thickest and thinnest parts of the membrane for each section, as described previously.
14
For light microscopy, semi-thin toluidine blue–stained sections were photographed on an Olympus photomicroscope (Olympus Corporation, Tokyo, Japan) equipped with a digital camera.
For morphometric analysis of RPE, ×60 magnification images were taken from three independent sections of each eye; four to six different eyes per group. Images were taken approximately 1 mm from the optic nerve head, on the same side as where TEM images were photographed. Quantification was performed using ImageJ software (National Institutes of Health [NIH], Bethesda, MD), setting thresholds for pigmentation based on the red channel or for vacuolation on the green channel against a dark background. Each section had a contiguous RPE stretch of 291 μm. For quantification of photoreceptor rows, measurements were averaged for images taken approximately 250, 1000, or 1500 μm from the optic nerve head.