Both intact and denuded AM, cell cultures on SF and AM were fixed with 4% PFA (Electron Microscopy Sciences) for 15 minutes, whereas for p63 staining, samples were fixed with methanol (VWR) at −20°C for 10 minutes. After three washes in PBS for 5 minutes each, samples were blocked and permeabilized with solution containing 1% BSA (Sigma-Aldrich), 0.25% Triton X-100 (EMD Chemicals, Darmstadt, Germany), and 2.5% donkey serum (Abcam) in PBS for 50 minutes. Primary monoclonal antibodies recognizing keratin 3/12 (K3/12, 1:100; Abcam), ΔNp63a (1:200, Cell Signaling Technology, Inc. Danvers, MA) for human corneal epithelial cells (HCECs), and pancytokeratin (AE1/AE3, 1:100, Abcam) for intact AM samples were applied and incubated overnight at 4°C. After extensive washing, secondary antibodies were then incubated for 1 hour using appropriate isotype-matched nonspecific IgG as controls. Samples were mounted with VECTASHIELD mounting medium with 4′,6-diamidino-2-phenylindole (DAPI) (Vector Laboratories, Burlingame, CA). Images were acquired using an Observer Z1 fluorescent microscope (Carl Zeiss, AG) with both ×10 (NA 0.45 air) and ×63 (NA 1.4 oil) objective lenses using a 1.6 Optivar optic. An AxioCam HRm digital camera (Carl Zeiss) and AxioVision 4.0 software (Carl Zeiss) was used to capture single and z-stack images (10–25-layer range) at 0.25-μm slices using DAPI, Green fluorescent protein (GFP) and Texas Red filter channels.
The percentage of K3/12 and ΔNp63a expression in the primary cells on SF and denuded AM was compared and analyzed.