The human and monkey DNA samples were screened for
MYOC sequence variations using a single-strand conformation
polymorphism (SSCP) assay that included the entire coding sequence and
the proximal promoter. Sequences upstream from the
MYOC coding sequence were also screened. In the humans, 913 bp of upstream
sequence was screened, whereas in the monkeys only 555 bp were
evaluated, because the 171-bp segment of the monkey promoter that
contains a short tandem repeat polymorphism (STRP) was excluded from
the assay. Genomic DNA (12.5 ng) from each human subject and each
cynomolgus monkey was PCR amplified in a 8.35-μl reaction containing
15 mM Tris-HCl (pH 8.3); 75 mM KCl; 2.25 mM
MgCl
2; 300 μM of dCTP, dATP, dGTP, and dTTP;
2.5 picomoles of each primer; and 0.25 units
Taq DNA
polymerase. Primers used in this assay are shown in
Table 1 . Samples
were denatured for 5 minutes at 94°C and incubated in a DNA
thermocycler for 35 cycles at the following temperatures: 94°C for 30
seconds, 55°C for 30 seconds, and 72°C for 30 seconds. After
amplification, 5 μl of stop solution (95% formamide, 10 mM NaOH,
0.05% bromophenol blue, and 0.05% xylene cyanol) was added to each
PCR product. The products were then denatured at 94°C for 3 minutes,
and 4 μl of each sample was loaded onto 6% (37.5:1 bis)
polyacrylamide, 0.5× TBE (44.5 mM Tris, 44.5 mM boric acid, and 0.5 mM
EDTA), nondenaturing gels. Products were electrophoresed at room
temperature for 3 hours at 25 W. DNA bands were visualized with silver
nitrate staining.
31 PCR products that produced aberrant
SSCP bands were sequenced to reveal the underlying DNA variations.