To analyze retinal nitrotyrosine, retinas were isolated, pooled,
and frozen in liquid nitrogen (n = 14 retinas from 7
mice per group). Pooled retinas were homogenized in lysis buffer (20 mM
Tris [pH 7.4], 2.5 mM EDTA, 1% Triton X-100, 1% deoxycholate, 0.1%
SDS, 40 mM NaF, 10 mM
Na4P2O7,
and 1 mM PMSF). Particulate material was removed by centrifugation at
12,000g at 4°C for 30 minutes. Retinal proteins (25 μg)
were immobilized onto a PVDF membrane (Bio-Rad, Hercules, CA) using the
40-well BioDot SF microfiltration unit (Bio-Rad). A dilution series of
peroxynitrite-modified bovine serum albumin standard was also loaded in
duplicate on each blot to generate a standard curve. The PVDF membranes
were blocked with 5% dry milk and reacted with mouse monoclonal
anti-nitrotyrosine antibody (Caymen, Ann Arbor, MI). The primary
antibody was detected using a horseradish peroxidase–conjugated goat
anti-mouse antibody and enhanced chemiluminescence (Amersham,
Cleveland, OH). Intensity of immunoreactivity was measured using
densitometry.