RT-PCR was carried out as previously described.
11 Briefly,
total RNA was extracted from T cells cultured for 48 hours with or
without I/CB PE cells by using Rneasy RNA extraction kit (Qiagen,
Chatsworth, CA). cDNA was synthesized with AMV reverse transcriptase
(Promega, Madison, WI) according to manufacturer’s
instructions. The following primers were used from 5′ to 3′: GAPDH
sense, GGTGAAGGTCGGTGTGAACGGA; GAPDH antisense, TGTTAGTGGGGTCTCGCTCCTG;
TGF-β1 sense, CAAGGAGACGGGAATACAGGGCT; TGF-β1 antisense,
CGCACACAGCAGTTCTTCTCTGT; TGF-β2 sense, CACCACAAAGACAGGAACCTGG;
TGF-β2 antisense, GCGAAGGCAGCAATTATCCTGCAC; IL-4 sense,
ACGGAGATGGATGTGCCAAACGTC; IL-4 antisense, ATGGTACTCCAGAAGACCAGAGG;
IL-10 sense, GGTTGCCAAGCCTTATCGGAAATG; IL-10 antisense,
TTGTAGACACCTTGGTCTTGGAGC; TNF-α sense,
GAAAGCATGATCCGCGACGTGGA; TNF-α antisense,
TACGACGTGGGCTACAGGCTTG; IFN-γ sense, CCTCATGGCTGTTTCTGGCTGTTA;
IFN-γ antisense, CATTGAATGCTTGGCGCTGGACC.
All primers were designed by Pascale Alard (University of
Virginia, Charlottesville, VA), and their specificities were confirmed
in preliminary experiments. Samples containing mRNA for PCR analysis
were treated with an excess of RNase-free DNA before DNA synthesis. PCR
was carried out under the following conditions: denaturation: 94°C,
30 seconds; annealing: 55°C, 30 seconds; extension: 72°C, 60
seconds. The amplification cycles used were determined by preliminary
experiments to obtain the best results. The cycles were as follows:
GAPDH, 20; TGF-β1, 25; TGF-β2, 25; IL-10, 30; IL-4, 40; IFN-γ,
25; and TNF-α, 30. In addition, we carried out the PCR using 1:2 or
1:3 serially diluted template cDNAs, which showed a linearity of
amplification through at least 30 cycles of amplification in our
system. After 20 to 40 cycles of amplification, PCR products were
electrophoresed in 2% agarose gel and visualized by ethidium bromide
staining. TGF-β2 expression was compared by semiquantitative PCR by
the method of Jaffe et al. with slight modification. PCR was
carried out with serially diluted cDNA. Then PCR products were
electrophoresed in 2% agarose gel and stained with 0.5 μg/ml
ethidium bromide for 20 minutes. Photographs of the gel were taken with
a high-resolution camera, and the density of the band of negative image
was analyzed by NIH Image software. The expression level of mRNA was
standardized by the expression of GAPDH as an internal control. The
predicted sizes of PCR product for relevant cytokines and growth
factors are TGF-β1, 260 bp; TGF-β2, 327 bp; IL-10, 233 bp; and
GAPDH, 245 bp. The PCR product for each cytokine was subjected to
restriction enzyme digestion to confirm its presence. In the case of
TGF-β2, the proper restriction patterns were observed when the
product was digested with XhoI and with MboI.