The primer pair for
αA-crystallin is upstream primer,
5′-ATGGACGTGACCATCCAG-3′; downstream primer, 5′-GGCTGCTATCTAA-3′
(reference accession no. U05569).
16 The expected product
size is 754 bp. The primer pair for
βB2-crystallin is:
upstream primer, 5′-GCAAGGGCGAGCAGTTT-3′; and downstream primer,
5′-GTTGGAGGGGTGGAAGG-3′ (reference accession no. L10035). Expected
product size is 434 bp. The primer pair for
GAPDH is
upstream sequence, 5′-TGAAGGTCGGAGTCAACGGATTTGGT-3′; and downstream
sequence, 5′-CATGTGGGCCATGCAGGTCCACCAC-3′ (Clontech, Palo Alto, CA).
Expected product size is 983 bp. The primer pair for
FGFR1 is upstream sequence, 5′-CGAGCTCACTGTGGAGTATCCATG-3′; and downstream
sequence, 5′-GTTACCCGCCAAGCACGTATAC-3′ (reference accession no.
M60485).
26 Our PCR conditions included the use of PCR
beads (Amersham Pharmacia, Piscataway, NJ). MgCl
2 (1.5 mM) was used in a standard 25-μl reaction mixture, unless
otherwise stated. For
βB2-crystallin, the PCR program was
2 minutes at 94°C, followed by 35 cycles of 30 seconds at 94°C, 30
seconds at 55°C, and 1 minute at 72°C followed by a final extension
of 5 minutes at 72°C. For
αA-crystallin, the PCR program
was 2 minutes at 95°C, followed by 35 cycles of a two-step procedure
of 1 minute at 95°C and 1 minute at 60°C. The
Mg
2+ concentration was supplemented to 2 mM in
the final reaction mixture. For
FGFR1, the PCR conditions
were essentially the same as that for αA-crystallin, without the
additional supplement of Mg
2+ in the reaction
mixture. For
GAPDH we used an initial denaturation of 5
minutes at 94°C, followed by 35 cycles of 45 seconds annealing at
60°C, 1 minute 30 seconds of extension at 72°C, 45 seconds at
94°C, and a final extension of 10 minutes at 72°C.