Isolation of RNA from ciliary body that was manually microdissected, snap frozen, and stored at −80°C was performed with standard techniques.
30 Briefly, the tissue was homogenized for 60 seconds (TRIzol; Gibco/BRL Gaithersburg, MD). Protein was extracted with phenol-chloroform, and the RNA was precipitated with isopropanol, washed with ethanol, and resuspended in RNase-free, HPLC-grade water. The purity of the RNA was ascertained with a ratio of absorbance at 260 nm to absorbance at 280 nm.
RT-PCR was performed on the ciliary body RNA by using lyophilized beads (Ready To Go RT-PCR; Amersham Pharmacia Biotech). First-strand synthesis was performed with approximately 1 μg RNA in a thermal cycler (model 9700; Applied Biosystems, Foster City, CA) preheated to 42°C, using an oligo dT primer. After 30 minutes of reverse transcription at 42°C, the reaction was heated to 95°C for 5 minutes. The tubes were removed from the thermal cycler and allowed to cool. PCR was performed with gene-specific forward and reverse primers, as well as 1 μL DNA Taq polymerase (Amplitaq; Roche Molecular Biochemicals, Branchburg, NJ). For both GAPDH and βB1, the reactions comprised 35 cycles (95°C for 30 seconds, 55°C for 30 seconds, and 72°C for 60 seconds, with a final cycle at 72°C for 7 minutes). The sequence of the primers used to amplify βB1-crystallin were 5′-CCATCAAAATGGATGCCCAGGAGCACAAAATCTCC-3′ (forward primer), and 5′-AGGGTTGGGGCAAGGTAGCAGAGTGAGGTGTGG-3′ (reverse primer; GibcoBRL). The sequences of the primers used to amplify GAPDH were 5′-TCACCAGGGCTGCTT TTAACTC-3′ (forward primer), and 5′-GGTCATGAGTCCTTCCACGATA-3′ (reverse primer; GibcoBRL). PCR products were then examined on 1.5% agarose gel with ethidium bromide staining.