RNA samples were denatured in 50% formamide and 6% formaldehyde in low-ionic-strength buffer (20 mM sodium phosphate [pH 7.7]) at 60°C for 5 minutes. The samples were electrophoresed through a 1% agarose gel containing 6% formaldehyde in 20 mM phosphate buffer (pH 7.7). RNA size standards (Life Technologies, Rockville, MD) were visualized by staining a portion of the gel with 0.5 μg/mL ethidium bromide. The RNA in the remainder of the gels was capillary transferred to nylon membrane (Zeta-Probe; Bio-Rad Laboratories, Hercules, CA) from 10× SSC (1.5 M NaCl, 0.15 M sodium citrate, pH 7.0).
Table 3lists the DNA fragments that were labeled for Northern blot hybridizations. Secretoglobin clones were digested with appropriate restriction enzymes, the desired fragments were purified in agarose gels, and each fragment was re-subcloned before isolation and labeling. The actin probe was a 1.5-kb mouse α-actin fragment (Stratagene, La Jolla, CA). The DNA probes were random prime-labeled (Prime-a-Gene Labeling System; Promega) with [α-
32P]dCTP (Perkin-Elmer Life Sciences, Shelton, CT). The labeled probes were denatured in a boiling water bath for 5 minutes and added to fresh hybridization solution at 1 × 10
6 to 1 × 10
7 cpm/mL.
For the secretoglobin probes, prehybridizations, and overnight hybridizations were performed in 5× SSC, 1× Denhardt’s reagent, 7% SDS, 50 μg/mL salmon testes DNA, and 20 mM Na2HPO4 (pH 7.2) at 55°C. The filter was washed three times for 20 minutes each in 50 mL 3× SSC, 10× Denhardt’s reagent, 5% SDS, and 25 mM Na2HPO4 (pH 7.2) at 55°C; once in 100 mL 1× SSC and 1% SDS at 55°C; and finally in 100 mL 0.5× SSC and 1% SDS at 55°C. For the 5′ abp-η, 3′ abp-δ and internal abp-δ probes, these washes were performed at 60°C. The blot was exposed to x-ray film (XAR; Eastman Kodak Co., Rochester, NY). After each hybridization, the blot was stripped twice in 0.1× SSC and 0.5% SDS at 95°C for 20 minutes each.
For the actin probe, prehybridization, and overnight hybridization were performed in 1 mM EDTA, 7% SDS, 50 μg/mL salmon testes DNA, and 0.5 M Na2HPO4 (pH 7.2) at 60°C. The filter was washed twice for 30 minutes each in 50 mL 1 mM EDTA, 5% SDS, and 40 mM Na2HPO4 (pH 7.2) at 60°C; twice in 50 mL 1 mM EDTA, 1% SDS, and 40 mM Na2HPO4 (pH 7.2) at 65°C. The blot was exposed to x-ray film.