CTGF mRNA transcripts were detected by a real-time quantitative RT-PCR procedure.
26 This technique for measuring mRNA levels is based on the 5′ exonuclease activity of
Taq polymerase on DNA–DNA oligonucleotide complexes.
27 In addition to gene-specific PCR primers, the kit (
TaqMan; Applied Biosystems, Inc.) includes a reporter probe that is coupled to two fluorescent dye molecules at the 5′ and 3′ ends of the probe.
28 A standard curve was generated with CTGF mRNA transcripts that were transcribed in vitro from a plasmid containing CTGF cDNA. Briefly, electrocompetent
Escherichia coli cells (Stratagene, La Jolla, CA) were transformed with a plasmid (pRc/CMV; Invitrogen, Carlsbad, CA) containing the full-length cDNA for human CTGF, colonies were selected with ampicillin, and 1 μg of isolated plasmid was transcribed with an in vitro transcription kit (Ambion, Austin, TX). CTGF mRNA was precipitated with ethanol and dissolved in DEPC-treated water. Reactions were assembled in a 96-well optical reaction plate. Each reaction contained 1× master mix from the kit (
TaqMan One-Step RT-PCR Master Mix; Applied Biosystems, Inc.), 900 nM forward primer (5′-AGCCGCCTCTGCATGGT-3′), 900 nM reverse primer (5′-CACTTCTTGCCCTTCTTAATGGTTCT-3′), 2 μM fluorescent probe (5′-6FAM-TTCCAGGTCAGCTTCGCAAGGCCT-TAMRA-3′), and RNA sample (CTGF mRNA standard or 500 ng of sample RNA) to a final volume of 25 μL per reaction. The plate was analyzed on a sequence-detection system (ABI Prism 5700 Sequence Detection System; Applied Biosystems, Inc.), which simultaneously performs RT-PCR and detects fluorescence signal. A standard curve was generated with the transcribed CTGF mRNA samples (2.3 × 10
−2 to 2.3 × 10
−6 pmol). The level of glyceraldehyde phosphate dehydrogenase (GAPDH) mRNA was also measured in each sample, with a kit (GAPDH Control Kit; Applied Biosystems, Foster City, CA), and the number of CTGF mRNA molecules in samples was expressed as picomoles of CTGF mRNA per nanomole of GAPDH mRNA. Levels of mRNA were expressed as mean ± SE of three replicate samples for each condition, and ANOVA and the Tukey HSD post hoc test were used to assess statistical significance between times and groups.