Refractive error was analyzed as a continuous variable for heritability estimation. The continuous trait was defined as the spherical equivalent refractive error, averaged between eyes. Spherical equivalent refractive error for the only eye contributing data was used in individuals with monocular pseudophakia or other conditions precluding bilateral refraction. Age was defined as the age at examination or, for bilaterally pseudophakic participants, as the age at the time of last refraction before cataract surgery (averaged between the dates for the two eyes). In addition, analyses were performed using myopia as a binary outcome. For these binary trait analyses, several thresholds were used to define myopia. These included mean spherical equivalent refractive errors lower than or equal to −0.50, −1.00, −1.50, and −2.00 D. Analyses for various definitions of hyperopia were also performed and are reported elsewhere.
28
Heritability is estimated from the degree of resemblance in a trait between siblings, or the proportion of additive genetic variance to total phenotypic variance. Mathematically, it is calculated as twice the phenotypic correlation between siblings or, in the case of multivariate regression, as twice the residual between-sibling correlation after adjustment for other variables. We estimated between-sibling correlations using multivariate linear regression models and extended GEEs, with the clustering variable being individual families.
25 Only self-reported full siblings were included in the analysis. Main covariates included in the statistical models were age, gender, and race. In addition, we investigated the effect of height, weight, and body mass index (BMI) on refractive error. Cataract grade was not significantly associated with refractive error in models including age and thus was not included in the final model.
Possible modifying effects on refractive errors were assessed by including three first-order interaction terms between age, gender, and race in the regression models. However, interactions between age and gender and between age and race were minimal and are not reported. We also performed stratified analyses to obtain race-specific heritability estimates for refractive error.
Although even large departures from multivariate normality assumptions have been shown to yield unbiased parameter estimates in heritability studies,
29 we also calculated the heritability of refractive error after applying a normalizing transformation, transformed refraction = ln(−refraction + 12), as suggested by Blackie and Harris.
30 The heritability estimate of the transformed data did not differ substantially from that obtained using the raw spherical equivalent refractive error (67% versus 62%). Hence, we report all analyses using the untransformed data.
For the binary trait analysis, we estimated the odds ratio (OR) of being myopic, given a myopic sibling relative to a nonmyopic sibling (i.e., recurrence OR) for our four definitions of myopia. This was accomplished by using logistic regression analysis and GEEs, as described by Liang and Beaty.
31 Affection status was coded as a binary variable and covariates, including a first-order gender-race interaction term, were identical with those in the linear regression analysis. No ascertainment correction was used, because participants were recruited independent of refractive status.
Logistic models using GEEs are advantageous as they provide unbiased estimates of sibling correlations and ORs while allowing for the incorporation of covariates and accommodating various family sizes.
26 Although the statistical properties of logistic regression lead to estimates of ORs, the parameter of interest for genetic linkage and association studies for binary traits is the sibling recurrence relative risk (λ
s) which is defined as the risk of being affected, given an affected sibling relative to the risk of being affected in the population (i.e., the population prevalence). ORs are biased estimates of relative risks, and the direction of the bias is always away from the null value of unity. For rare diseases the bias is negligible. However, for more common conditions, such as myopia, the difference can be substantial. We transformed our estimated sibling recurrence ORs into λ
s using
\[{\lambda}_{\mathrm{s}}\ {=}\ \frac{1}{prev}\ \frac{\mathrm{OR}_{\mathrm{s}}(prev/(1\ {-}\ prev))}{{[}1\ {+}\ \mathrm{OR}_{\mathrm{s}}(prev/(1\ {-}\ prev)){]}}\]
where
prev is the estimated population prevalence of myopia, and the ratio
prev/(1−
prev) represents the odds of myopia. Prevalences of myopia were 0.20, 0.15, 0.11, and 0.09 for myopia thresholds of −0.50, −1.00, −1.50, and −2.00 D, respectively. These population prevalence estimates were obtained from our data and are consistent with previously reported data for older populations.
23
The statistical analyses were performed in R version 1.7.1
32 using the GEE library, version 4.13-8. The GEE library was extended to accommodate logistic models and provide sibling recurrence ORs.