The total RNA isolated from conjunctival biopsy tissues and conjunctival fibroblasts of control individuals and patients with OCP were used to detect relative expression of CTGF and type I collagen mRNA. The principle of real-time quantitative PCR has been described elsewhere.
24 25 Total RNA was extracted from conjunctival tissues and conjunctival fibroblasts with an RNA isolation kit (Qiagen, Valencia, CA). The primers and probe used for detecting mRNA for CTGF were, forward: GAG GAA AAC ATT AAG AAG GGC AAA, reverse: CGG CAC AGG TCT TGA TGA, probe (
TaqMan; Applied Biosystems, Foster City, CA): FAM-TTT GAG CTT TCT GGC TGC ACC AGT GT-TAMRA; and type I collagen, forward: CCT CAA GGG CTC CAA CGA G, reverse: TCA ATC ACT GTC TTG CCC CA, probe (
TaqMan; Applied Biosystems): FAM-ATG GCT GCA CGA GTC ACA CCG GA-TAMRA. Each PCR reaction contained equivalent amounts of total RNA. Real-time PCR was performed in duplicate with a kit used according to the manufacturer’s recommendation (
TaqMan PCR reagent kit; Applied Biosystems). All the reactions were controlled by standards (nontemplate control and standard positive control). The quantity of mRNA was calculated by normalizing the
C T (threshold cycle value) of CTGF or type I collagen to the
C T of the housekeeping genes 18S or GAPDH of the same RNA probe, according to the following formula: the average 18S or GAPDH
C T (each multiplex PCR was performed in duplicate) was subtracted from the average CTGF or type I collagen
C T, this result represent the Δ
C T. This Δ
C T is specific and can be compared with the Δ
C T of a calibration sample (for example control conjunctiva or control conjunctival fibroblasts). The subtraction of control Δ
C T from the Δ
C T of OCP samples is referred as ΔΔ
C T. The relative expression of CTGF, or type I collagen (in comparison to controls) in conjunctival tissues and fibroblasts isolated from conjunctiva of patients with OCP was determined by 2
−ΔΔC T . Similar calculations were made for the expression of CTGF and type I collagen in TGF-β1-treated fibroblasts, in comparison to nontreated fibroblasts. For all the probes the quencher dye was 6 carboxy-tetramethylrhodamine (TAMRA), the reporter dye was 6 carboxy fluorescein (FAM) for CTGF, and type I collagen, and VIC for 18S or GAPDH.