High-molecular-weight genomic DNA was extracted from each blood sample using the Puregene kit (Gentra. Minneapolis, MN). Linkage studies were conducted using six fluorescently labeled microsatellite markers spanning the DURS2 locus (D2S2330, D2S335, D2S326, D2S2314, D2S364, and D2S117), five spanning the SALL4 locus (D20S119, D20S178, D20S196, D20S100, and D20S171), and five spanning the HOXA1 locus (D7S493, D7S1821, MT26723, MT27012, and D7S516). Fluorescently labeled primers were purchased from Invitrogen (Carlsbad, CA), and amplicons were generated by 30 cycles of PCR amplification containing 10 to 30 ng of genomic DNA in 5-μL reaction volumes of Taq PCR master mix (Qiagen, Valencia, CA) containing 2 picomoles of each fluorescent primer pair, 1 nanomole each of dATP, dTTP, dGTP, and dCTP, and 0.15 U Taq polymerase. The products were analyzed in a DNA analyzer (model 3730; Applied Biosystems [ABI], Foster City, CA).
For linkage analysis, an individual was scored as affected based on clinical examination and/or clinical examination records. Lod scores were calculated with the MLINK (v5.1 with 2-point autosomal data) part of the LINKAGE package,
34 assuming autosomal dominant inheritance with 95% penetrance and a disease incidence of 1 in 1000,000 births. Because of the absence of specific allele frequencies for the two ethnic groups represented in the study, we assumed 10 marker alleles of equal frequency.