To reduce background staining, any nonspecific binding sites within the retinal slices were blocked by incubation with 4% normal donkey serum (Jackson ImmunoResearch Laboratory, West Grove, PA) in 0.1 M PB and 0.1% Triton X-100 for 1 hour at room temperature. After blocking, the samples were incubated separately with the primary antibodies against GluR1, -R2/3, and -R4 (Chemicon, Temecula, CA) for 48 hours at 4°C. The antibodies were diluted 1:100 in blocking solution. The polyclonal antibodies against GluR1, -R2/3, and -R4 were raised against synthetic peptides corresponding to the C-terminal sequences of rat glutamate receptor subunits in rabbits. All antibodies gave single bands of 106-, 110-, and 110-kDa molecular weight for GluR1, -2/3, and -R4, respectively, on Western blot analysis against the microsome fraction of the rat brain (manufacturer’s technical information). In addition, we tested the specificity of these antiserums directly in our laboratory, and showed single bands of ∼110 kDa molecular weight for GluR1, -R2/3, and -R4 on Western blot analysis against the rabbit brain tissue (
Supplementary Fig. S1). Furthermore, these antibodies also have been reported previously to label GluR1, -R2/3, and -R4 specifically in the rabbit retina.
35 To confirm the retinal layers and to label the AII amacrine cells and some ganglion cells, we co-incubated the retinal slices with goat polyclonal antibody against calretinin (1:400; Chemicon). In a separate experiment, we also co-incubated the retinal slices with goat polyclonal antibody against choline acetyltransferase (ChAT, 1:200; Chemicon), to label cholinergic amacrine cells. After the specimens were rinsed, secondary antibodies conjugated to Cy5 and FITC (1:100; Jackson ImmunoResearch Laboratory) were applied overnight at 4°C to visualize the GluRs and calretinin, respectively. The specificity of the immunostaining was evaluated by omitting the primary antibody during the incubation steps (Supplementary Fig. S2). The retinal slices were finally mounted in the mounting medium containing 90% glycerol and 5% propyl gallate for confocal imaging. To ensure a direct comparison of the intensity of staining for the different AMPA receptor subunits, we performed immunohistochemistry at the same time on all samples, and all subsequent images were acquired with the same confocal settings. The problem of signal saturation in the immunocytochemistry applications was avoided by using lower dilution factors of primary antibody and carefully adjusting the confocal setting when taking images. The number of retinas per animal used at each developmental stage was E21 (2/2), E26 (4/4), P0 (6/6), P2 (6/6), P4 (4/4), P6 (5/5), P8 (5/5), P10 (5/5), and P25 (4/4).