Selective genotyping was performed on backcross progeny of high (
n = 10) and low (
n = 10) phenotypic extremes, with the single-flash cone b-wave implicit time trait used to select these groups. We chose this trait as there was a highly significant difference in single-flash b-wave implicit time between the two strains
(Table 1) . We did not choose an amplitude trait, as these were more likely to be influenced by environmental traits.
17 This screening was performed to reduce sample size, cost, and time and to increase statistical power.
18 A genome scan was performed with markers spaced at no more than 30 cM apart along each chromosome and at most 15 cM from centromeres and telomeres. Exceptions to this rule were the most proximal markers on Chr 2 (27.5 cM), Chr 7 (26 cM), Chr 9 (21 cM), Chr 10 (20 cM), and Chr 18 (20 cM) and the most distal markers on Chr 1 (21 cM), Chr 7 (21 cM), Chr 14 (21 cM), and Chr 15 (19 cM). One hundred twelve SNP markers were genotyped commercially (Kbioscience, Herts, UK) with SNP detection assays (Amplifluor, Ashby de la Zouch, UK) from a published panel of informative markers
19 20 ; 86 were informative. In addition, 19 informative microsatellite markers were genotyped in-house. Additional genotyping was performed, using all backcrossed DNAs to verify any suggestive linkage. Two additional microsatellite markers (
D19Mit88 and
D19Mit1) were genotyped within a QTL on Chr 19 in all backcrossed DNAs. All informative markers used in the genome scan are available on request.