Data analysis was performed with custom software (developed in MatLab; The MathWorks, Natick, MA). Raw coil signals were converted to rotation vectors, using straight-ahead fixation as the reference position.
11 Both before and after surgery when the to-be-paretic eye or the paretic eye, respectively, was habitually patched, we used the prepatch reference position for each eye. Once habitual binocular viewing was allowed, we updated the reference position daily. Signal gains were determined using a test coil, and offsets were minimized by shielding connectors with a magnetic shield (MuMetal; MuShield Co., Inc., Londonderry, NH). Angular eye velocity was computed from the rotation vectors.
12 Signs conform to the right-hand rule: positive positions and velocities are leftward, downward, and clockwise, from the perspective of the animal. To calculate the location of the primary position relative to the straight-ahead reference position, we performed for each eye a least-squares linear (i.e., planar) regression of the torsional component to the horizontal and vertical components of the individual rotation vectors, fitting the data to the equation:
\[r_{x}\ {=}\ a_{0}\ {+}\ a_{1}r_{y}\ {+}\ a_{2}r_{z}\]
where
r x is the torsional component,
r y is the vertical component, and
r z is the horizontal component. The torsional offset is calculated from
a 0, and the horizontal and vertical components of primary position from
a 1 and
a 2, respectively, relative to the original reference position.
13 We followed the convention of prior studies and defined the “thickness” of the plane by the standard deviations (SDs) of the torsional residuals from the regression.
14 Each regression fit was performed on the set of all instantaneous (sampled at 1 kHz) rotation vectors from a given recording session and condition (e.g., paretic eye viewing) that satisfied a specific velocity criterion. For fixation data, the magnitude of the angular velocity vector had to be 2°/s or less; for saccade data, it had to be 30°/s or greater.