Retinal NF-κB DNA-binding activity levels were measured in control and diabetic rats treated with the anti–CD49d or control antibody 2 weeks after the induction of diabetes. Pooled retinas were homogenized with a mechanical homogenizer in five pellet volumes of buffer A (20 mM Tris, pH 7.6, 10 mM KCl, 0.2 mM EDTA, 20% [by vol] glycerol, 1.5 mM MgCl2, 2 mM dithiothreitol [DTT]), 1 mM Na3VO4 and protease inhibitors [Complete TM; Boehringer Mannheim, Mannheim, Germany]). Nuclei were pelleted (2500g, 10 minutes) and resuspended in two pellet volumes of buffer B (identical to buffer A except that KCl was increased to 0.42 M). Nuclei debris was removed by centrifugation (15,000g, 20 minutes), and the supernatant was dialyzed against one change of buffer Z (20 mM Tris-HCl [pH 7.8], 0.1 M KCl, 0.2 mM EDTA, 20% glycerol) for at least 3 hours at 4°C with cassettes (Dialyze Z; Pierce Biotechnology, Inc.). Protein concentration was measured with the BCA assay. Two micrograms of the retinal nuclear extracts were analyzed with a commercially available, ELISA-based assay that measures binding of active NF-κB to DNA (Trans-AM; NF-B p65 Transcription Factor Assay, Active Motif North America, Carlsbad, CA), according to the instructions of the manufacturer. The peroxidase reaction was quantified at 450 nm with a reference wavelength of 655 nm.