Sequencing
RS1 along both strands showed a deletion/insertion mutation in all six affected subjects, with a 1-bp deletion replaced by an 18-bp insertion at the same nucleotide (354 del C, 354–371 Ins GGTGTGCCTGGCTCTCCA;
Fig. 6). The resulting frame shift creates a UAG termination signal six codons downstream. The inserted sequence duplicates the adjacent upstream sequence of both strands. The duplicated sequence spanned an intron–exon junction, from the last nucleotide of intron 4 through the first 17 nucleotides of exon 5. This duplication involves the RNA splice-donor and splice-acceptor sites surrounding the splice-donor site of intron 4 and generates an additional intron–exon junction 27 bp downstream of the original intron–exon junction. Consequently, we examined whether this mutation affects pre-RNA splicing.
RS1-WT and
RS1-MUT minigenes were constructed by PCR amplification of normal genomic DNA and the XLRS subject's genomic DNA (c354del1-ins18;
Fig. 7), and were transiently transfected into COS-7 cells to monitor the mutational effect on pre-mRNA splicing and RS1-protein expression. Total RNA isolated from COS-7 cells expressing the minigenes was used as templates for the RT-PCR with primers flanking the mutation (NT-206–463, exon 4–5 of
RS1 cDNA). The
RS1-WT minigene cells yielded the predicted 257-bp RT-PCR product. Cells expressing the
RS1-MUT minigene produced a longer PCR product (
Fig. 8A, top) that corresponded to the size of the 18-bp insertion. RT-PCR with primers flanking the CDS of the
RS1 gene (NT-1–675) produced the similar result, with longer PCR product in cells with the
RS1-MUT minigene (
Fig. 8A, bottom). No aberrantly spliced products were observed for the mutant mRNA, indicating that the duplication of the intron–exon junction 27 bp 3′ downstream of the original splice junction did not affect pre-RNA splicing. This finding was confirmed by subcloning the full length cDNA derived from RNA isolated from COS-7 cells expressing the minigenes. DNA sequence analysis of several of these subclones confirmed that the wild-type and mutant RNAs are processed similarly.
Western-blot analysis of the medium of cells transfected with the
RS1-WT minigene showed a single ∼22-kDa RS1-protein band (
Fig. 8B), with very little detected in the cell lysates, consistent with the secreted nature of RS1 protein. However, mutant RS1 protein was not detected either in the medium or in the cellular fractions of
RS1-MUT minigene cells. The 18-bp insertion introduces an amber stop codon, UAG, that prematurely terminates translation—that is, a frame-shift change with Asp 118 as the first affected amino acid changing to Glu and creating a new reading frame ending in a UAG stop codon at position 14 (pAsp118Glu fsX14). We were unable to detect any truncated RS1 protein in the Western blot analyses. It is unlikely from loss of the antibody epitope, as the anti-RS1 polyclonal antibody against the N terminus amino acids 24–37 of RS1 would recognize the N terminus epitope if a truncated 131-amino-acid protein were present. The absence of any truncated RS1 mutant is consistent with rapid degradation of the protein. The loss of mutant RS1 could also be due to loss of mRNA triggered by NMD. Nonsense-mediated mRNA decay (NMD) in mammalian cells is a well-characterized mRNA surveillance mechanism by which aberrant mRNAs harboring premature translation termination codons (PTCs) are rapidly degraded
26,27 —an intron-dependent regulatory mechanism that eliminates abnormal transcripts. To analyze whether the premature termination codon introduced by the c354del1-ins18-bp mutation interferes with
RS1 mRNA expression levels, we performed real-time RT-PCR on total RNA isolated from COS-7 cells expressing the
RS1-WT and
RS1-MUT minigenes. Control and mutant cells showed no difference of RNA levels, which indicate that the loss of mutant protein was not due to NMD. We then used an intronless mutant cDNA construct, which escapes NMD-dependent RNA degradation, to transfect COS-7 cells (FuGene; Roche) to amplify the mutant protein. However, the truncated RS1-protein product was never observed in cells expressing the intronless mutant minigene.
As this absence of mutant protein could result from reduced synthesis or accelerated degradation, we investigated whether the proteasome pathway is involved in degradation of the mutant protein. Cells expressing the intronless WT- and MUT-cDNA constructs were exposed to 50 μM MG 132 proteasome inhibitor for 6 hours and subjected to immunoblot analysis. Protein bands immunoreactive to RS1 antibody were detected in MG132-treated cells with the intronless MUT (
Fig. 8C). A protein band of ∼14-kDa approximate mass was seen that corresponds to the size of the truncated RS1, along with a 28-kDa band presumed to be the dimer of the truncated species. However, no truncated RS1 was found in the medium. Untreated control cells did not exhibit these bands. The finding that truncated RS1 accumulates only in the presence of proteasome inhibitor demonstrates that the mechanism underlying the rapid degradation of the mutant protein involves the proteasomal pathway and that the c354del1-ins18 mutation gives a RS1-protein null phenotype.