Optic nerves (6–8 mm long) or retinas from rats 7 or 2 days, respectively, after ischemia were sonicated in 100 μL homogenization buffer (20 mM Tris-HCl, pH 7.4, containing 2 mM EDTA, 0.5 mM EGTA, 1% SDS, 0.1 mM phenylmethylsulfonyl fluoride, 50 μg/mL aprotinin, 50 μg/mL leupeptin, and 50 μg/mL pepstatin A), to which an equal volume of sample buffer (62.5 mM Tris/HCl, pH 7.4, containing 4% sodium dodecyl sulfate, 10% glycerol, 10% mercaptoethanol, and 0.002% bromophenol blue) was added. Optic nerve and retinal samples were boiled for 3 minutes, and an aliquot was analyzed for total protein content using a bicinchoninic acid protein kit (Sigma-Aldrich, St. Louis, MO).
Retinal proteins from tissues 7 days after ischemia were separated and isolated from RNA according to the standard tri-reagent procedure. Proteins from individual retinas were then solubilized in 200 μL homogenization buffer/protease inhibitor solution, to which was added an equal volume of sample buffer.
Equal amounts of protein were fractionated by electrophoresis with the use of 10% polyacrylamide gels containing 0.1% SDS, as described by Laemmli.
43 Proteins were transferred to nitrocellulose, and blots were incubated for 3 hours at room temperature with various primary antibodies. Detection was then performed with appropriate biotinylated secondary antibodies. The final nitrocellulose blots were developed with a 0.016% wt/vol solution of 3-amino-9-ethylcarbazole (AEC) in 50 mM sodium acetate (pH 5.0) containing 0.05% (vol/vol) Tween-20 and 0.03% (vol/vol) H
2O
2. The colorimetric reaction was stopped with 0.05% sodium azide solution, and the blot was scanned at 800 dpi (Perfection 1200u scanner; Epson, Torrance, CA). Quantitative analysis of the detected proteins was performed with analysis software (UVP Products).
Primary antibodies used were as follows: rabbit anti–EP1, anti–EP2, anti–EP3, and anti–EP4 polyclonal antibodies (1:500; Cayman, Ann Arbor, MI); mouse anti–PARP-1 (1:1000, Becton-Dickinson, Oxford, UK); mouse anti–actin (1:2000; Chemicon, Edinburgh, UK); tubulin and NF-L (1:2000; Chemicon); and primary rabbit antibody to GFAP (1: 2000; Dako Scientific, Glostrup, Denmark).