For S opsin ISH, retinas of P21 mice (Pax8−/−: n = 6; Pax8+/−: n = 5; Pax8+/+: n = 6) were fixed in 4% paraformaldehyde/PBS (pH 7.4), washed in PBS (10 minutes), acetylated in 0.1 M triethanolamine/0.25% acetic anhydride (pH 8.0; 10 minutes), and equilibrated in 5× SSC (5 minutes). Retinal wholemounts were prehybridized for 2 hours at 58°C with 20 μL hybridization buffer (50% deionized formamide, 5× SSC, 100 μg/mL salmon testes DNA, 100 μg/mL yeast tRNA, 2.5× Denhardt's solution, 5 mM EDTA, and 0.05% CHAPS). Hybridization was performed for 16 hours at 58°C in 30 μL fresh hybridization buffer with the addition of denatured DIG-labeled riboprobes to antisense mouse Opn1sw (50 ng/mL). Riboprobes were generated by in vitro transcription of a T7 promoter-coupled PCR template (nt 630-973, NM_007538), with RNA polymerase and DIG-labeled rUTP (DIG RNA Labeling Kit; Roche, Mannheim, Germany). Hybridized tissue was washed at 58°C in 2× SSC buffer (three changes) and 0.1× SSC buffer (three changes) before equilibration in 100 mM Tris-HCl and 150 mM NaCl (pH 7.5). Incubation with alkaline phosphatase-coupled anti-digoxigenin Fab fragments (1:2500; Roche) was performed in the same buffer supplemented with 1% BSA and 0.5% blocking reagent (Roche; 2 hours, RT). After they were washed in 100 mM Tris-HCl/400 mM NaCl (pH 7.5), the retinas were equilibrated in 100 mM Tris-HCl, 100 mM NaCl, 50 mM MgCl2 (pH 9.5), and antibody binding sites were visualized by incubation in NBT (5 μL/mL)/BCIP (3.75 μL/mL) in the same medium. The color reaction was performed at RT and stopped after 5 hours in 10 mM Tris-HCl and 1 mM EDTA (pH 8.0). The retinas were mounted in glycerol.