Nerve guidance behaviors throughout the developing embryo have been shown to be regulated by ECM molecules in multiple reports. We therefore sought to examine distributions of ECM–GAG molecules in eyefronts during specific stages during cornea innervation. To do so, the localization patterns of CSA/C, DS, and KS were examined by confocal microscopy in eyefronts following staining with mAb CS56 to CSA/CSC, mAb 7D4 to native CS/DS, and mAbs I22 and 5D4 to KS (see
Table 1 for further information on antibodies used in this study). Confocal stack projections of Tuj1 staining in chick eyefronts were also prepared and are provided in
Figure 3 to show the progression of nerve growth cones during eye development (
Figs. 3A,
3F,
3K,
3P,
3U) alongside the localization patterns for each GAG. At E9, staining with CS-56 (CSA/C) and 7D4 (CS/DS) were present throughout the anterior limbal mesenchyme, but were noticeably absent in the posterior limbal mesenchyme where the nerve ring and nerve fibers were located (
Figs. 3A–C). Additionally, staining patterns for 7D4 (CS/DS) were detectable within the corneal stroma; however, staining was absent from the anterior corneal stromal layers that are the direct paths of incoming nerve fibers (
Fig. 3C, showing staining in corneal edge; see Supplementary Material and
Supplementary Fig. S2, showing staining in the central cornea). It is likely that 7D4 cornea staining in the E9 cornea represents DS epitopes, because CS-56 (CSA/C, but not DS) was absent from the cornea at this stage (
Fig. 3B, corneal edge; see Supplementary Material and
Supplementary Fig. S2, central cornea). Antibody staining with I22 and 5D4 (both KS) at E9 could not be detected in limbal tissue, yet both KS antibodies stained tissue prominently throughout the corneal stroma, directly in the path of corneal nerves (
Figs. 3D,
3E, corneal edge; see Supplementary Material and
Supplementary Fig. S2, central cornea). By E10, nerves had traversed through the limbus and their advancing growth cones were now in the anterior stroma (
Fig. 3F). Consistent with observations reported above, nerves began to display branching/bifurcation patterns along areas of their trunks located within the corneal stroma (
Fig. 3F, open arrowhead). In comparison, CS-56 staining (CSA/C) at E10 was expanded in eyefronts compared with a day earlier, becoming localized throughout the entire limbus and also detectable in the posterior stromal layers of the cornea (
Fig. 3G, corneal edge; see Supplementary Material and
Supplementary Fig. S2, central cornea). At this stage, the staining pattern for CS-56 (CSA/C) in the cornea was localized to similar regions as 7D4 staining (CS/DS) and both staining patterns were noticeably absent in the anterior stroma, where nerves were detected (
Figs. 3G,
3H). In contrast, staining patterns with I22 and 5D4 (both to KS) remained absent in the limbus yet were detectable within all corneal layers at E10 (
Figs. 3I,
3J, corneal edge; see Supplementary Material and
Supplementary Fig. S2, central cornea). At E11, nerves continued to progress through the anterior stroma, toward the epithelial layer (
Fig. 3K), whereas the staining patterns for CS-56 (CSA/C) and 7D4 (CS/DS) remained localized to limbal tissues (data not shown) and to corneal stroma layers that were directly posterior to nerves (
Figs. 3L,
3M). Meanwhile, I22 and 5D4 staining (both to KS) persisted throughout all stromal layers, regardless of the absence or the presence of nerves (
Figs. 3N,
3O). At E12 to E14, time points when advancing nerve growth cones have progressed into the corneal epithelium (
Figs. 3P,
3U), CS-56 (CSA/C), and 7D4 (CS/DS) staining appeared to expand into more posterior corneal layers, but staining for each antibody remained absent in the anterior stroma (
Figs. 3Q,
3R,
3V,
3W). Moreover, at these stages, CS-56 (CSA/C) and 7D4 (CS/DS) staining was much more robust in the limbus, compared with the corneal tissues, indicating a rise in the levels of CS and DS epitopes in the limbus between E9 and E14 (
Figs. 4B,
4C). At concurrent stages, I22 and 5D4 staining (both for KS) continued to persist throughout all corneal stromal layers (
Figs. 3S,
3T,
3X,
3Y), and was absent in the limbus (
Figs. 4D,
4E).