First-strand cDNA was synthesized from 1 μg of total RNA using random hexamers and M-MuLV reverse transcriptase (Ready-to-Go You-Prime First-Strand Beads; GE Health Care, Piscataway, NJ), as previously described.
21 Real-time PCR was performed using gene expression assay primers and MGB probes specific for murine GAPDH, MMP-9, IL-6, TGF-β1, TGF-β2, IL-17A, IL-23 receptor, IL-17 receptor, RORγT, IFN-γ, IL-2, IL-12, T-bet, IL-12 receptor β1, IL-18 receptor, IL-4, IL-13, and EGF (Assay IDs: Mm99999915, Mm01240564, Mm00446490, Mm004417241, Mm00436952, Mm00439619, Mm00519942, Mm00434214, Mm00441139, Mm00801778, Mm00434256, Mm00434165, Mm00450960, Mm01351787, Mm01233989, Mm00445259, Mm00434204, and Mm01187875, respectively). The
GAPDH gene was used as an endogenous reference for each reaction. The results of quantitative PCR were analyzed by the comparative
C t method where target change = 2
−ΔΔC t (User Bulletin, No. 2, P/N 4303859; ABI). The cycle threshold (
C t) was determined using the primary (fluorescent) signal as the cycle at which the signal crossed a user-defined threshold. The results were normalized by the
Ct value of
GAPDH, and the mean
Ct of relative mRNA level in the C57BL/6 untreated group was used as the calibrator.