Cells were detached as previously mentioned and the cell suspension was diluted with culture medium to 106 cells per milliliter, 1 mL was added to flow cytometry tubes, and centrifuged for 10 minutes at 200g. For analysis only, cells were fixed for 5 minutes in 1 mL 3% vol/vol formaldehyde (Sigma Aldrich) in PBS. Cells were washed before incubation with the appropriate primary conjugated antibodies for 30 minutes at room temperature. For each sample a corresponding isotype control was incubated in a separate tube. A tube of cells was identically prepared but without antibody for the purposes of gating. After 30 minutes, cells were washed, centrifuged at 200g for 10 minutes, and resuspended in 1 mL PBS before analysis.
Antibodies were as follows: CD11b, CD13, CD19, CD29, CD34, CD44, CD45, CD49b, CD49d, CD49e, CD105, HLA-ABC, and HLA-DR (Beckman Coulter, London, UK); CD49f, CD104, CD106, and cytokeratin (CK) 14 (AbD Serotec, Oxford, UK); CD73 (R&D Systems, Foster City, CA); CD90 (BD Pharmingen, Oxford, UK); CD133/2 and CD271 (Miltenyi Biotec, Surrey, UK); ABCG2 (Santa Cruz; Inside Biotechnology, Middlesex, UK); Cytokeratin 19 (CK19) and vimentin (Abcam, Cambridge, UK); Stro-1 (Biolegend, Cambridge, UK); and keratin 3/76 (Millipore; Fisher Scientific).