Six animals per time point were used for immunohistochemical analysis. Samples were immediately postfixed after extraction by submersion in 1% paraformaldehyde for 30 minutes, followed by overnight cryoprotection with 15% sucrose. Tissue was then embedded in OCT compound and snap frozen with liquid nitrogen. Sagittal cryosections of 16-μm thickness were mounted on slides (Superfrost Plus; Menzel-Gläser, Braunschweig, Germany), dried for 30 minutes at room temperature, and stored at −20°C. Sections including the optic nerve head as a landmark were used for immunolabeling.
The sections were further fixed in −20°C ethanol for 10 minutes if they were for Cx43 and astrocyte labeling; otherwise this step was omitted. After a thorough rinsing in phosphate-buffered solution (PBS), the sections were preincubated in the appropriate blocking buffer (10% normal goat serum and 0.1% Triton X-100 in PBS for all except RGC labeling in which 10% horse serum was substituted) for 1 hour at room temperature.
Primary antibodies were applied overnight at 4°C for Cx43 (rabbit polyclonal anti-Cx43, 1:2000; Sigma-Aldrich, St. Louis, MO), retinal ganglion cells (anti-Brn-3a, 1:500, Santa Cruz Biotechnology Inc., Santa Cruz, CA), astrocytes (mouse monoclonal anti-glial fibrillary acidic protein [GFAP-Cy3 conjugate], 1:1000; Sigma-Aldrich), Müller cells (mouse monoclonal anti-glutamine synthetase [GS], 1:200; Abcam, Cambridge, UK), activated microglia (mouse monoclonal anti-OX-42 [CD11b], 1:100; Serotec, Oxford, UK), and blood vessel endothelial cells (mouse monoclonal anti-isolectin IB4; IL-B4)/Alexa 594 conjugate, 1:100; Invitrogen-Molecular Probes, Eugene, OR).
After rinsing in PBS, appropriate secondary antibodies were applied for 2 hours at room temperature, including goat anti-rabbit Alexa 488 (1:1000; Invitrogen, Carlsbad, CA), goat anti-mouse Alexa488 (1:500; Invitrogen), goat anti-mouse Cy3 (1:500; Jackson ImmunoResearch Laboratories Inc.), and donkey anti-goat Cy3 (1:1000, Jackson ImmunoResearch Laboratories Inc.).
After further rinsing in PBS, the sections were mounted in antifade reagent with DAPI (ProLong Gold; Molecular Probes) on coverslips, which also provided precise identification of retinal and nerve morphology.