As part of our ongoing effort to characterize the set of genes that cause inherited retinal degenerations in the Israeli and Palestinian populations, we recruited 468 index cases with clear AR (328 families) or suspected AR (140 families) nonsyndromic early-onset retinal degenerations (EORD), including mainly RP, LCA, and cone–rod degeneration (CRD). We performed a preliminary mutation analysis using the Asper LCA and ARRP microarrays to screen 39 of the index patients, and identified a previously reported
CRB1 mutation in only one case. Aiming to identify the causative genes in our cohort, we focused our analysis on 237 of the families in which the parents of the index case were consanguineous, as well as families in which the parents were unrelated, but shared the same ethnic origin. We performed homozygosity analysis using whole-genome SNP microarrays in 175 of the families (see Supplemental Material and
Supplemental Table S2). A large homozygous region harboring the
CRB1 gene on chromosome 1 was identified in 10 patients who belong to nine families (
Table 1). Homozygosity mapping in each consanguineous patient revealed a relatively high number (8–48, an average of 17) of large homozygous regions (>10 Mb) per patient. Ranking of the genomic regions by size revealed that the region harboring the
CRB1 gene ranged from first to 17th (an average ranking of 4.6). Sequencing analysis of the 12
CRB1 exons and exon-intron boundaries in the nine index cases revealed disease-causing mutations in six families, with an average
CRB1 region size ranking of 3.7 (
Table 1). A subsequent screen for the identified mutations in additional patients (based on the ethnic group in which each mutation was identified,
Table 2) followed by CRB1 screening for a second mutation on the counter allele when needed, revealed a total of 13 mutations (
Table 2), 6 of which were novel, in 15 families, 9 of which were consanguineous. The analysis scheme is presented as a flowchart in Supplementary Figure S1 (see
Supplemental Material).