RNFL B-scans were randomized, and a custom segmentation algorithm
45,46 was used to identify the inner limiting membrane and junction between the RNFL and RGC layer. In brief, B-scan images (1536 × 496 pixels) first were de-noised using a Haar 2D stationary wavelet and convolved with a Gaussian filter (SD = 4). An iterative process then was used to identify intensity changes, corresponding to the layers of interest, within the signal profile of each A-scan. Any errors in layer identification, most commonly around shadows of major retinal vasculature, were corrected manually. To account for the nonneural retinal vasculature, B-scans first were rescaled to a 1:1 aspect ratio using the computed transverse scaling. The diameter of each major retinal vessel was determined from the corresponding shadows cast on the underlying retina (Mardin CY, et al.
IOVS 2009;50: ARVO E-Abstract 3333). The center of each vessel was marked manually, and a circular region matching that of the vessel was subtracted from the RNFL thickness (
Figs. 2C,
2D). RNFL thickness measures were transformed to area by multiplying the thickness for each A-scan by its calculated width. Although the SD-OCT instrument used aligns scans to the fovea, it is dependent on accurate fixation. In addition, as repeat scans were not acquired, it is possible that the alignment would be different, especially with change in magnification. Hence for improved accuracy, before calculating global, quadrant, and 30-degree sector (
Fig. 2C) thickness and area measures, the start of the TSNIT plot was shifted to align with a line passing from the center of the circular scan to the anatomic center of the foveal pit (
Fig. 3A). Methods used for identification of the fovea center, registration, and alignment of the TSNIT plot have been described previously.
46 In brief, the center of the fovea was identified using the total retinal thickness map of the macula cube scan. The general location of the pit was determined as the central region with thinnest retina. The center of the pit then was established as the center of concentric circles fit to iso-thicknesses planes at varying depths in this central region. The IR SLO images from the RNFL and macula scans then were registered and a reference line was fit from the center of the circular scan to the foveal pit center.