Paraffin-embedded UM tissue sections (4 μm) from 121 patients were examined for JARID1B expression with immunohistochemistry (IHC) using JARID1B mouse monoclonal antibodies (1.5 μm/mL, clone 1G10; Abgent, San Diego, CA). Eighteen tissue sections were not included in the JARID1B analysis due to faulty staining or missing tumor tissue. An alkalinephosphatase (AP)-linking antibody conjugate system (Bond Polymer Refine Detection Red; Leica Microsystems, Buffalo Grove, IL) was used as a polymerization method to prepare the polymeric AP-linking antibody. This biotin-free, polymeric AP-linking antibody conjugate system (Leica Microsystems) detects tissue-bound mouse and rabbit IgG and some primary IgM antibodies from mouse. The detection system avoids the use of streptavidin and biotin, thus eliminating nonspecific staining as a result of endogenous biotin.
For immunohistochemical staining with vision surround system BOND-MAX (Leica Microsystems), an in vivo diagnostics red detection system (DS9390 Bond Polymer Refine Red Detection kit; Leica Microsystems) was used containing post-primary AP, AP polymer (secondary antibody), Fast Red, and HTX. Primary antibodies were diluted with diluent (AR9352 Bond Primary Antibody Diluent, Tris-buffered saline, surfactant, protein stabilizer, and 0.35% ProClin 950; Leica Microsystems).
The histology glass slides were first placed on a tray and protected with a covering plate. The automated IHC and ISH staining system (Leica Bond-Max; Leica Microsystems) was then loaded with the slides and reagents. First, there was a deparaffining with (AR9222 Bond Dewax Solution; Leica Microsystems), then a hydrogenation with 99.7% ethanol (Solveco Chemical AB, Tåby, Sweden). The slides were heated up to 100°C with an EDTA-based pH 9.0 solution (AR9640 Bond Epitope Retrieval Solution 2, EDTA-based buffer and surfactant; Leica Microsystems), which helps to enhance antigenic activity through unmasking of the antigen. The primary antibody was added and then the post-primary AP (10% animal serum in Tris-buffered saline and 0.09% ProClin 950; SAFC Global, St. Louis, MO) that locates antibodies from mice. The secondary antibody (poly-AP anti-rabbit IgG with 10% animal serum in Tris-buffered saline and 0.09% ProClin 950; SAFC Global) was then added. Between all steps in the staining, slides were washed with a concentrated buffer solution (AR9590 Bond Wash Solution 10× Concentrate, Tris-buffered saline, surfactant and 3.5% ProClin 950; Leica Microsystems). Substrate chromogene Fast Red is composed of four parts: Part A (activator of 0.05% ProClin 950 in solution; SAFC Global), B (medium), Part C (substrate) and Part D (buffer solution containing 0.05% ProClin 950; SAFC Global). These four parts together allowed the antigen with the red chromogene antibodies to be viewed in the light microscope. Finally, glasses were contrast colored with HTX (0.02% hematoxylin) and mounted with coverslips (Menzel GmbH & Co. KG, Braunschweig, Germany). Tonsil tissue and cutaneous melanoma were used as a positive control, and isotype controls for each primary antibody as well as the application of secondary antibody alone were used as negative controls.