This study was approved by the Swiss Federal Department of Health (Authorization # 035.0003-48) and follows the principles of the Declaration of Helsinki. Blood samples were collected after informed consent. Genomic DNA was extracted from peripheral blood using a genomic DNA extraction kit (Nucleon BACC3; GE Healthcare, Glattbrugg, Switzerland). Mutation screening of the entire coding sequence and intron-exon junctions of
NR2E3 was undertaken. Primers covered the eight exons of transcript variant 2 (NM_014249.2) encoding the full-length human NR2E3 protein (
Table 1). These primers replaced previously used ones covering a misspliced transcript variant 1 that retains part of the intron 7 but does not contain exon 8 (NM_016346.2).The polymerase chain reaction (PCR) was performed in a total volume of 20 μL, containing 100 ng genomic DNA, 1 μM of each primer (Eurogentec, Liège, Belgium), and 10 μL of a premixed solution (peqGold PCR Master Mix Y; Peqlab, Erlangen, Germany). Amplification was performed in a thermal cycler (GeneAmp 9700; Applied Biosystems, Carlsbad, CA) as follows: 1 minute at 95°C, 35 cycles of 1 minute at 94°C, 1 minute at 60°C, 1 minute at 72°C, and a final elongation step at 72°C for 10 minutes. PCR-amplified products were purified with a PCR purification kit (Invitek MSB Spin PCRapace kit; STRATEC Molecular GmbH, Berlin, Germany). Bidirectional Sanger sequencing was done in a final reaction volume of 10 μL, using a cycle sequencing kit (BigDye Terminator v3.1; Applied Biosystems). Fragments were separated on a genetic analyzer (ABI PRISM 3100; Applied Biosystems). Sequences were analyzed using a chromatogram sequencing software (Chromas 2.23; Technelysium, Tewantin, QLD, Australia) and aligned with the reference genomic
NR2E3 sequence NW_001838218.2. Information for molecular diagnosis for mutations located in precursor mRNA-processing factor 3 (
PRPF3), rhodopsin (
RHO), retinitis pigmentosa 1 (
RP1), peripherin 2 (
PRPH2/RDS), C1q- and tumor necrosis factor-related protein 5 (
CTRP5/C1QTNF5) and prominin-1 (
PROM1) genes are available on request.