To obtain broader insight regarding how CTGF affects TM cell physiology, we evaluated changes in global gene expression profile in HTM cells treated with CTGF by cDNA microarray analysis using an Affymetrix human gene chip containing over 47,000 gene transcripts. We used duplicate sets of control and CTGF-stimulated HTM cells (derived from passage 4 of cells from a 16-year-old donor). Only genes that showed a consistent and significant trend in both sets are discussed in this report. Microarray data revealed a number of genes that either were upregulated or down-regulated significantly in CTGF treated cells (summarized in
Tables 2 and
3, respectively). To our surprise, only a limited number of genes showed consistent and significant differences between control and CTGF treated cells. Some of the upregulated genes include tumor-associated calcium signal transducer 2 (
TACSTD2), several of melanoma antigen family genes, NMU, interleukin-6, interleukin-32, C/EBP (delta) transcription factor, tripartite motif-containing 58 and Ras-related GTP binding D. There was a slightly higher number of down-regulated genes in CTGF-treated HTM cells, including
stanniocalcin-1, endothelial cell specific molecule-1 (
ESM1/Endocan), matrix metallopeptidase-1 (
MMP1), interleukin-8, pentraxin-related gene (
PTX3),
BMP-2, interleukin-13 receptor, angiopoietin-like-4, coronin, endothelin receptor type A, phorbol-12-myristate-13-acetate-induced protein 1 (
PMAIP1), tumor necrosis factor (TNF)-alpha-induced protein (TSG-6), dual specific phosphatase-6 (
DUSP6) and hyaluronan synthase-2. Of the differentially expressed genes, a few representative upregulated and down-regulated genes were evaluated further independently by Q-PCR and semi-quantitative PCR. For this, we used the same source of RNA used to conduct the cDNA microarray analysis described above. The results for
NMU,
MMP1, and
stanniocalcin-1 were consistent with the results of cDNA microarray analysis (
Fig. 5).
GAPDH expression was quantified in treated and untreated specimens along with the above described genes to confirm normalization of the test and control single strand cDNA specimens (
Fig. 5).