Reverse transcription–polymerase chain reaction (RT-PCR) was performed to determine whether hypoxic stimulus upregulates the mRNA expression of MT1-MMP, MMP-2, VEGF, VEGFR-1, and VEGFR-2. The level of β-actin mRNA was used for a standard. Total RNA was extracted from the confluent retinal glial cells under either normoxia or hypoxia for 6, 12, and 24 hours (Isogen; Nippon Gene, Toyama, Japan), and total RNA (2 μg) was reverse transcribed in a 15-μL reaction volume (First-Strand cDNA Synthesis Kit; Pharmacia Biotech, Uppsala, Sweden) as described previously.
10 One microliter of the reaction mixture was then subjected to PCR for amplification of each molecule. PCR was performed in a 50-μL reaction volume containing 800 nM of each primer, 250 nM of dNTPs, and 5 U
Taq DNA polymerase (Toyobo, Tokyo, Japan) with a thermal controller (MiniCycler; MJ Research, Inc., Watertown, MA). Primer sequences, annealing temperature and the expected size of amplified cDNA for each molecule are summarized in
Table 1 . The number of PCR cycles was 30 for MT1-MMP, MMP-2, VEGF, VEGFR-1, and VEGFR-2 and 25 for β-actin. The thermal cycle was 1 minute at 94°C, 2 minutes at the temperatures shown in
Table 1 , and 3 minutes at 72°C, followed by final extension for 3 minutes at 72°C. Equal volume of PCR products (6 μL) was electrophoresed on a 1.5% agarose gel and stained with ethidium bromide. Quantification of band density was performed using NIH Image 1.41 software (available by ftp from zippy.nimh.nih.gov/or from http://rsb.info.nih.gov/nih-image; developed by Wayne Rasband, National Institutes of Health, Bethesda, MD).