Identifying early retinal gene responses to rAION can suggest pathways critical for RGC stress, cell death commitment, and retinal homeostasis. Analyses of retinal gene expression of selected genes are shown in
Fig. 7 . Retinal c-fos expression rapidly increased after rAION induction, with c-fos mRNA levels five times higher than in the contralateral (control) eyes 5 hours after rAION induction (
Fig. 7A ; 5.7% ± 3.5% [SD]). c-Fos levels were equivalent in both eyes 7 days after induction (1.0% ± 0.5%). The rAIO-induced early increase in c-fos expression is statistically significant (Student’s two-tailed
t-test;
P < 0.05). No observable difference in c-fos expression occurred between sham-treated (laser light alone) and control eyes 1 day after sham rAION induction (data not shown). Brn 3.2 mRNA levels declined 1 day after induction to ∼50% of control (contralateral) levels (
Fig. 7D ; −0.5% ± 0.2% SD), and remain at half of the control value (−0.5% ± 0.3% SD) at 7 days after induction. The 50% decline in brn 3.2 mRNA correlates well with the later (∼40%) RGC decrease in rAION-treated retinas (see
Fig. 5 ; RGCs in rAION-treated vs. control eyes). Little if any alteration in outer retinal cell function occurred, as measured by the photoreceptor-specific gene opsin mRNA, between induction and 7 days after induction (
Fig. 7E ; opsin; 0 days, 1.1% ± 0.2%, and 7 days, −0.2% ± 0.1%). Changes in HSP90 isoform mRNA expression levels are not statistically significant (data not shown). There was a trend for HSP86
(Fig. 7C) and -84
(Fig. 7F) to increase over uninduced retinas from 3 to 7 days (compare
Fig. 7C : HSP86, 3–7 days;
Fig. 7F : HSP84, 3–7 days). HSP70-1/2 mRNA expression is stable after induction for the first 2 days (1.0% ± 0.2% at 0 days vs. –0.1% ± 0.2% at day 2;
Fig. 7B , HSP70-1/2), with a possible slight increase at 3 days after rAION (
Fig. 7B ; HSP70-1/2, 3 days, 1.3% ± 0.7%). HSP70-1/2 levels were at baseline 7 days after induction (
Fig. 7B ; HSP70-1/2; 7 days, 1.0% ± 0.3%).