To investigate potential links to human retina disease and the diversity of cone arrestins, we next analyzed vertebrate cone arrestin gene structures. The human and mouse cone arrestin genes have been cloned, and their exon-intron arrangement has been determined.
25 26 These genes were shown to consist of 17 exons (one noncoding exon is located in the 5′untranslated region [UTR]). We identified human (AC068231, AL357752) and mouse (AC091784) genomic contigs in GenBank that verified the published gene structures
(Figs. 4A 4B) . The human contig AL357752 containing the entire cArr gene localized the gene to chromosome X (q13.2-21.1) which significantly narrowed the published locus (Xcen-Cq22).
25 In addition to human and mouse, we determined the gene structures of rat (
Rattus norvegicus) and zebrafish (
Danio rerio) cArr from large anonymous contigs (AC095218, AL590151) containing the entire cArr genes. As expected, the rat cArr gene structure
(Fig. 4C) , consisting of 17 exons, was nearly identical with that of mouse and human
(Figs. 4A 4B) . In contrast, the zebrafish cArr gene
(Fig. 4C) consisted of only 16 exons and encoded a 362 amino acid polypeptide with a significantly truncated C-terminal region. The zebrafish cArr gene features an exon 15 that is only 4 bp (one amino acid) in length, separated from exons 14 and 16 by a 302 and 91 bp introns, respectively. Like the mammalian cArr genes, the first exon is located in the 5′UTR. The predicted RNA and amino acid sequences were verified by 15 independent ESTs (10 of which are shown in
Fig. 4D ) that cover the entire 5′UTR, the coding sequence, and the 3′UTR. In contrast to complex alternative splicing observed in human and mouse cArr genes,
25 26 the zebrafish ESTs deposited in GenBank show no significant variation in splicing (apart from one EST with a short deletion in the 3′UTR). Phylogenetic analysis of the polypeptide sequences reveals that rod and cone arrestins fall into two distinct, but closely related subfamilies, as has been shown previously.
27 The 7G6 epitope, however, is only present in primate and bovine cone arrestins.