For immunohistochemical analysis, eyes were fixed in 4% paraformaldehyde, rinsed, cryoprotected in 30% sucrose overnight, frozen in optimal cutting temperature (OCT) compound (TissueTek; Sakura Finetek, Torrance CA) and cut into 14-μm cryostat sections. Immunohistochemistry was performed as described previously,
17 with the following primary antibodies: rabbit anti-mouse SWL-cone opsin
19 (a generous gift from Jeanny Chen, University of Southern California, Los Angeles, CA) and rabbit anti-human MWL-cone opsin
20 (JH 492; a generous gift from Jeremy Nathans, Johns Hopkins University School of Medicine, Baltimore, MD). For visualization, fluorescently labeled secondary antibodies (Alexa 488; Molecular Probes) were used. Each staining was performed on slides from at least three animals per condition. Sections were examined by confocal microscopy (Leica, Deerfield, IL), and the images were pseudo-colored (Photoshop; Adobe Systems, Mountain View, CA). To determine cone opsin distribution, images were binarized and thresholded, to set the background to zero, and distribution profiles were analyzed in Image J (NIH; available by ftp at zippy.nimh.nih.gov/ or at http://rsb.info.nih.gov/nih-image; developed by Wayne Rasband, National Institutes of Health, Bethesda, MD). In sections in which cone spacing allowed imaging of individual cones (i.e.,
Rpe65 −/−::
Rho −/− mice), single cone profiles were analyzed. In all other cases, a group of photoreceptors (20–30) were measured together. Cone lengths (OS to synaptic pedicle) and distribution profiles were normalized to 100%, and data points were binned based on the smallest image of the samples to be compared (Matlab, ver. 6.5; The MathWorks, Natick, MA). The profiles of the mean ± SD opsin distribution were plotted (Origin software; Microcal). Opsin distribution profiles were compared by averaging over the three regions of interest (0%–20%, OS; 20%–90%, inner segment cell body, and axon; and 90%–100%, synaptic pedicle relative lengths), with Student’s
t-test used to determine statistical significance.