Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) was performed on confluent trabecular monolayer cells after incubation in DMEM-FBS or DMEM-AH for 5 days. After incubation, cells were washed twice with PBS, trypsinized and collected by centrifugation at 1000g for 5 minutes. Cell pellets were resuspended in PBS and centrifuged again. A second resuspension in PBS followed by centrifugation was performed to remove trypsin from the cell pellet.
Trabecular cell pellets were solubilized in cell lysis buffer (50 mM Tris [pH 8.0], 0.5% sodium dodecyl sulfate, 0.5% Triton, 137 mM NaCl, 3 mM KCl, 8 mM Na2HPO4·7H2O, 1 mM KH2PO4, and protease inhibitors; Roche Diagnostics, Indianapolis, IN). Samples were vortexed and placed at 4°C for 60 minutes followed by sonication. Insoluble material was removed from lysate by centrifugation at 10,000g for 5 minutes. Supernatant was collected, and a Bradford protein assay was performed to determine protein concentration (Bio-Rad). Fifty micrograms of each sample was diluted with rehydration buffer (7 M urea, 2 M thiourea, 4% CHAPS [3-[3-cholamidopropyl]dimethylammonio-2-hydroxy-1-propanesulfonate], 60 mM dithiothreitol, and 1% chromatofocusing medium; Pharmalyte; GE Healthcare [formerly Amersham], Piscataway, NJ], and 0.25% 3–10 NL IPG buffer [BioRad]) and loaded onto 18-cm pH 3–10 NL IPG strips [GE Healthcare]). After 16 hours of rehydration, the strips were focused (Protean IEF Cell; Bio-Rad) for a total of 45,000 volt-hours at 20°C. After isoelectric focusing, strips were equilibrated in SDS-PAGE running buffer (Laemmli system) in two steps: the first in the presence of 1% dithiothreitol for 10 minutes and the second in the presence of 2% iodoacetamide for 15 minutes, to reduce and alkylate the cysteines. Agarose (1% in running buffer) was used to seal the strip in place at the top of a 4% to 15% Tris-HCl gel (20 × 20 × 0.1 cm). Proteins were electrophoresed in the gels at 200 V for 6 hours at 18°C. The gels were silver stained, to visualize the proteins. Gels were scanned with a 12 bit-depth scanner (GS 800 calibrated densitometer; Bio-Rad).