To correct for any movement in the slice plane, a warp affine image coregistration was performed on each animal with software written in-house. This procedure was performed for all the animals used in the final analysis but was only necessary in approximately half of them, regardless of group (e.g., subtle shifting of the animals’ position occurred during the experiment because of settling on the gauze packing). Because the slice thickness (1 mm) was relatively large compared with the diameter of the eye (approximately 3 mm), partial volumes would be similar if the eye subtly moved out of the imaging plane, and so the data analysis results were not expected to be substantially affected. After coregistration, the MRI data were transferred to a computer (Power Mac G4; Apple Computer, Cupertino, CA) and analyzed using NIH Image (a freeware program available at http://rsb.info.nih.gov/nih-image/available by ftp at zippy.nimh.nih.gov/; developed by Wayne Rasband, National Institutes of Health, Bethesda, MD). Images obtained during room air breathing were averaged to improve the signal-to-noise ratio. All pixel signal intensities in the average room air image and the 2-minute carbogen image were then normalized to the external standard intensity. Signal intensity changes during carbogen breathing were calculated and converted to ΔP
o 2, on a pixel-by-pixel basis, as follows.
7 For each pixel, the fractional signal enhancement,
E, was calculated:
\[E\ {=}\ (S(t)\ {-}\ S_{0})/S_{0}\]
, where
S(
t) is the pixel signal intensity at time
t after starting the gas inhalation, and
S 0 is the control signal intensity (measured from the average of the three control images) at the same pixel spatial location.
E is converted into ΔP
o 2 according to a theory that has been validated in the rat
14 :
\[{\Delta}\mathrm{PO}_{2}\ {=}\ E/(R_{1}\ {\cdot}\ T_{k})\]
, where
R 1 is the oxygen relaxivity (seconds per mm Hg), and
T k =
T r · exp(−
T r/
T 10),
T r is the repetition time, and
T 10 is the
T 1 in the absence of oxygen. Using a
T r of 1 second and assuming a vitreous
T 10 of 4 seconds,
T k = 3.52. This
T 10 is based on our previous measurement of the proton spin-lattice TR in the rabbit vitreous (4 seconds) and reported values in human vitreous (3.3 seconds) and cerebral spinal fluid (4.3 seconds), which has a high water content similar to vitreous.
7 15 16 17 An
R 1 of 2 × 10
−4 s
−1/mm Hg
−1 was used. This
R 1 had been measured in a saline phantom, which is assumed to be a reasonable model of vitreous (98% water).
7 A similar
R 1 was found for plasma, suggesting that relatively low protein levels do not substantially contribute to the oxygen relaxivity.
18 Note that an
E of 0.01 (i.e., a 1% signal-intensity change) corresponds to a ΔP
o 2 of 14 mm Hg.