To determine the potential overlap between the cell death mechanisms triggered by the two light paradigms, we first compared our gene expression data as documented here with those published by Rattner and Nathans,
26 who allowed cell death mechanisms to develop for 24 hours after BL damage. Our study and that of Rattner and Nathans
26 used two different arrays, U74 (our study; approximately 12,000 elements) and MOE430
26 (more than 39,000 elements). Approximately 72% of the genes and ESTs of the smaller array are contained on the larger array based on more than 95% identity between the sequences. Rattner and Nathans
26 reported the misregulation of approximately 300 genes, with 57% (176/311) of those misregulated genes present on the U74 array. Of these 176 genes, 41 were found to be differentially regulated in the CL damage model
(Table 1) . These genes range from transcription factors (e.g.,
Cebpδ,
JunB,
Stat3) to oxidative stress-related genes (e.g.,
Mt1,
Mt2,
Cp,
A2m,
B2m) and immune and defense genes (e.g., complement system [
C3,
C4,
C1qα,
Serping1] and others [
Serpina3n,
H2-D1,
Sh2d1a,
B2m,
LOC56628,
Spp1]) and more. Of these 41 genes, 17 genes were upregulated after 7 hours of BL,
27 including the three transcription factors (
Stat3,
JunB,
Cebpδ), the five oxidative stress genes (
Mt1,
Mt2,
Cp,
A2m,
B2m), the three immune and defense genes (
Serpina3n,
B2m,
Spp1), and others (
Msn,
Socs3,
Crym,
Osmr,
Lcn2,
Myo10,
Edn2). Finally, three genes—two transcription factors (
Cebpδ,
JunB) and one oxidative stress-related gene (
Mt2)—were upregulated by 3 hours of BL exposure.
28 Incidentally, these three genes were upregulated in all four studies. Thus, as expected, early cellular responses to BL are mediated by changes in transcription factor levels and the upregulation of free-radical scavengers. Common cellular responses that occur 24 hours or later are mediated by genes whose products are involved in oxidative stress and the immune and defense responses. Taken together, the two light damage mouse models share a significant number of genes, suggesting that similar cellular pathways are activated.