Three potential sequences targeting the human
MUC16 gene were chosen using software from OligoEngine, Inc. (Seattle, WA). Custom complementary oligonucleotides were synthesized, annealed, and ligated into a mammalian expression vector (pSuperRetro-puro; OligoEngine, Inc., Seattle, WA) that directs the intracellular synthesis of siRNA transcripts.
37 Insert sequences used were: Sequence #1, sense, 5′-AGCCACCTCATCTATTACCTTCAAGAGAGGTAATAGATGAGGTGGCT-3′, antisense, 5′-AGCCACCTCATCTATTACCTCTCTTAGAAGGTAATAGATGAGGTGGCT-3′; Sequence #2, sense, 5′-CTGCATGTACTCCCATCTCTTCAAGAGAGAGATGGGAGTAGATGCAG-3′, antisense, 5′-CTGCATCTACTCCCATCTCTCTCTTGAAGAGATGGGAGTAGATGCAG-3′; Sequence #3, sense, 5′-TAACCATCACCACCCAAACTTCAAGAGAGTTTGGGTGGTGATGGTTA-3′, antisense, 5′-TAACCATCACCACCCAAACTCTCTTGAAGTTTGGGTGGTGATGGTTA-3′. The ligated vectors were transformed into chemically competent
Escherichia coli (DH5α cells), correct orientation of the hairpin siRNA insert was verified with DNA sequencing, and large-scale cultures were grown to obtain a sufficient amount of plasmid vector. Using lipid-mediated transfection reagents, the vectors were transfected into 293–10A1 cells, a packaging cell line that produces high-titer retrovirus in culture (ATCC). HCLE cells were then seeded in 24-well plates at 2 × 10
4 cells per well and grown to 40% confluence in serum-free growth medium. Tissue culture medium from transfected 293–10A1 cells
38 was filtered 48 hours after transfection, and the viral supernatant was used to infect cultures of the subconfluent HCLE cells after the addition of 4 μg/mL polybrene. Isolated clones were obtained using antibiotic selection (puromycin) and further expanded to confluence to obtain stably transfected cells. Then the transfected cells were grown to confluence and switched to stratification medium as described.