Expression levels of ACAT1, MDR1, nCEH, and ABCA1 mRNAs were evaluated in PFs and in NCFs by semiquantitative, reverse transcription polymerase chain reaction (RT-PCR) with β-actin as RNA controls. Approximately 106 cells were untreated or treated with the drugs. RNA extractions were performed using reagent (Trizol; Invitrogen).
Equal amounts of total RNA (1 μg) were reverse transcribed into cDNA using the random hexamer method. cDNA was subsequently amplified by PCR in the presence of specific primers according to the instructions provided by the manufacturer (GeneAmp RNA PCR Kit; Perkin-Elmer Cetus, Foster City, CA).
PCR was performed using the following primers and conditions: for ACAT1, 5′AGCAGAGGCAGAGGAATTGA3′, 5′GCACACCTGGCAAGATGGAG 3′ (466-bp fragment), 95°C for 30 seconds, 58°C for 50 seconds, and 72°C for 60 seconds for 40 cycles; for MDR1, 5′CCCATCATTGCAATAGCAGG3′, 5′GTTCAAACTTCTGCTCCTGA3′ (167-bp fragment), 94°C for 30 seconds, 55°C for 60 seconds, and 72°C for 60 seconds for 30 cycles; for nCEH, 5′CTTGTAAACTTGAGTTGGAG3′, 5′GTAGGAAGTAACCACATTCA3′ (151-bp fragment), 94°C for 30 seconds, 55°C for 60 seconds, and 72°C for 60 seconds, for 30 cycles; for ABCA1, 5′TCCTCTCCCAGAGCAAAAAGC3′, 5′CTCCACAACACTTCACATGGT3′ (286-bp fragment), 95°C for 30 seconds, 62°C for 60 seconds, and 72°C for 30 seconds, for 30 cycles; for β-actin, 5′AGGGGCCGGACTCGTCATACT 3′, 5′GGCGGCACCACCATGTACCCT 3′ (202-bp fragment); 96°C for 30 seconds, 60°C for 59 seconds, and 72°C for 45 seconds, for 20 cycles.
Subsaturation levels of cDNA templates needed to produce a dose-dependent amount of PCR product were defined in initial experiments by testing a range of template concentrations. Subsequent PCR was carried out with subsaturation levels of RT reactions with identical amplification parameters.