Rats were killed with sodium pentobarbital (intravenously; Wako) 4, 6, or 8 weeks after injection (n = 4 for each time period), and enucleated eyes were immersion fixed for 10 minutes in 4% paraformaldehyde in a sodium cacodylate buffer (0.1 N; pH 7.4; Wako). After the cornea and lens were removed, the eyecup was cut in half. Half the tissue was stored in the fixative solution, and small areas of retina were excised and embedded in low melting point agarose (Sigma-Aldrich) for immunocytochemical analysis by confocal microscopy. Embedded sections were cut on a vibratome and blocked overnight in normal donkey serum (1:20; Jackson ImmunoResearch Laboratories Inc., West Grove, PA) at 4°C. Sections were then incubated with primary antibodies overnight at 4°C on a rotator. Primary antibodies used in this study were a mouse monoclonal antibody (mAb) to rod opsin (1:400; Chemicon, Temecula, CA), a mouse mAb to vimentin (1:400; Sigma), a rabbit polyclonal Ab (pAb) to glial fibrillary acidic protein (1:400; GFAP; Dako, Glostrup, Denmark), and a rabbit pAb to medium/long wavelength-sensitive (M/L) cone opsin (1:200; Chemicon). All antibody solutions were made in PBTA (0.1 M PBS) containing 0.5% bovine serum albumin (BSA; Fisher Scientific, Pittsburgh, PA), 0.1% Triton X-100 (Boehringer-Mannheim, Indianapolis, IN), and 0.1% sodium azide (Sigma-Aldrich). After the sections were rinsed in PBTA, they were incubated with donkey anti–mouse IgG conjugated to the fluorochrome Cy3 (GFAP, M/L cone opsin) and donkey anti–rabbit IgG conjugated to the fluorochrome Cy2 (rod opsin, vimentin; Jackson ImmunoResearch Laboratories) overnight at 4°C on a rotator. Sections were mounted in mounting medium for fluorescence (Vectashield; Vector Laboratories, Inc., Burlingame, CA) and were viewed using a laser scanning confocal microscope.
For high-resolution transmitted light microscopy analysis, the other half of the eyecup was immersion fixed in 1% glutaraldehyde (Wako) and 1% paraformaldehyde (Wako) in a sodium phosphate buffer (0.086 M; pH 7.3) overnight at 4°C and then was fixed in phosphate-buffered osmium tetroxide (2%; Nisshin-EM Co., Tokyo, Japan) for 1 hour and embedded in Epoxy resin (Nisshin-EM Co.). Samples were sectioned at 1 μm and were stained with toluidine blue (Wako).
The number of photoreceptor cells was counted using a standardized approach adapted from a previously described protocol.
18 Three 50-μm sampling bins were established for each of six retinal regions: superior peripheral, superior equatorial, superior central, inferior central, inferior equatorial, and inferior peripheral. Three sections were examined for each eye, giving a total of nine samples per region and 54 samples per eye.