In three types of cultured human microvascular endothelial cells—dermal (HDMVEC; Vec Technologies, Inc. Rensselaer, NY), choroidal (HCEC; gift of Mary Elizabeth Hartnett, Department of Ophthalmology, University of North Carolina), and retinal (HREC; Cell Systems Corporation, Kirkland, WA)—mRNA levels for nAChR isoforms were measured using a real-time reverse transcription-polymerase chain reaction (RT-PCR) assay. Total RNA was extracted from cultured cells using purification kit (RNeasy Mini Kit; Qiagen, Valencia, CA) according to the protocol provided by the manufacturer. Primers and probes (Assays-on-Demand; Applied Biosystems, Foster City, CA) for the human genes of the nAChR subunits α1, α2, α3, α4, α5, α6, α7, α9, α10, β1, β2, β3, and β4 were used for one-step real-time RT-PCR. The nucleotide databases were searched to confirm gene specificity. To avoid amplification of contaminating genomic DNA, the primers were located at an exon/intron junction. For each assay, we used no-template and no-reverse transcriptase (RT) controls, which produced insignificant signals, suggesting that primer-dimer formation and genomic DNA contamination effects were negligible.
All PCR reactions were performed using a sequence detection system (ABI Prism 7500; Applied Biosystems) and reagent (TaqMan Multiscribe & RNase Inhibitor Mix; Applied Biosystems) according to the manufacturer’s protocol. Briefly, 2 μL diluted total RNA (100 ng) was added to 0.5 μL of the 40× PCR master mix and 1 μL 20× gene expression mix (Assays-on-Demand; Applied Biosystems). The amplification included a 30-minute, 48°C step required for reverse transcription, and a denaturation step for 10 minutes at 95°C, followed by 40 cycles consisting of 15 seconds at 95°C and 1 minute at 60°C. Data from triplicate samples were analyzed with the sequence detector software (Applied Biosystems) and expressed as mean (± SD) of mRNA relative to that of 18S RNA. Fold induction over control was determined by normalizing treated samples to the control.