TUNEL was performed as described.
13 For immunostaining, retinal sections were preblocked with PBS containing 3% bovine serum albumin (Sigma-Aldrich) and 0.3% Triton X-100 (Sigma-Aldrich) for 1 hour at room temperature (RT) and incubated with primary antibody overnight at 4°C and with secondary antibody for 2 hours at RT. To identify BrdU
+ cells, retinal sections were also treated with HCl (2.0 M) for 1 hour at RT and reacted with anti-BrdU (1:200; Chemicon, Temecula, CA) in PBS containing 1% bovine serum albumin, 1% dimethylsulfoxide, and 0.1% Triton X-100. Other antibodies used were Cy3-conjugated mouse anti-GFAP (1:2000; Sigma-Aldrich); biotin-conjugated mouse anti-isolectin B4 (1:100; Sigma-Aldrich); monoclonal antibodies against glutamine synthetase, NeuN, β-III tubulin, cyclin D3, and nestin and rabbit polyclonal antibodies against recoverin and syntaxin (1:200; all from Chemicon); rabbit anti-pHisH3, PKCα (1:200; Santa Cruz Biotechnology, Santa Cruz, CA); sheep anti-Chx10 (1:200; Exalpha Biologicals, Watertown, MA); mouse anti-rhodopsin (Rho1D4;1:4000, courtesy of Robert S. Molday, University of British Columbia, Canada)
14 ; rabbit anti-CRALBP (1:5000; courtesy of John C. Saari, University of Washington, Seattle)
15 ; rabbit anti-Nr2e3 (1:2000; courtesy of Shiming Chen, Washington University School of Medicine, St. Louis),
16 and secondary antibodies conjugated with fluorescein (Vector Laboratories, Burlingame, CA) or Cy2, Cy3, or Cy5 (Jackson ImmunoResearch Laboratories, West Grove, PA). Rat anti-BrdU (1:80; Novus Biologicals, Littleton, CO) was also used for retinal double staining, followed by reactions with biotinylated anti-rat IgG (1:50, Sigma-Aldrich) and Cy2- or Cy3-conjugated streptavidin (1:100, Jackson ImmunoResearch Laboratories). Retinal sections were also counterstained by a nuclear marker, 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI, 1 mg/mL in PBS; Sigma-Aldrich) or a nuclear stain (SYTOX green; Invitrogen), to reveal the retinal cellular structure.