RNA was isolated from lenses, retinas, and brains and transcribed to cDNA according to standard procedures; genomic DNA was isolated from liver or tail tips. Using the primers Crybb2-L3 (5′-ATGGCCTCAGACCACCAGACAC-3′) and Crybb2-R1 (5′-GGCACGAGCCACACTTTATTCTTC-3′), PCR products of 667 bp (wt) or 724 bp (O377 mutants) were observed. Sequencing was performed commercially (SequiServe, Vaterstetten, Germany) after isolation of the DNA from the gel (Nucleospin Extract; Macherey-Nagel, Düren, Germany).
The mRNA sequence was translated using the ExPASy Proteomics server available at http://www.expasy.org/. The PDB file used to model the proteins was generated from The SwissModel First Approach Mode (http://swissmodel.expasy.org//SWISS-MODEL.html). The protein has been modeled using the MDL Chime software (http://www.mdl.com).
For quantitative real-time PCR (qRT-PCR), 3 μg brain RNA from C3HeB/FeJ (C3H) and
O377 mice (
n = 4 mice/strain) was reverse transcribed into first-strand cDNA (Ready-to-Go T-Primed First-Strand Kit; Amersham Biosciences, Freiburg, Germany) in a 33-μL reaction volume, in accordance with the manufacturer’s instruction. cDNA (1 μL) was used in a subsequent PCR reaction using 11.5 μL mix (Absolute qPCR SYBR Green ROX; ABgene, Hamburg, Germany), 1.0 μL each primer, and 10.5 μL RNase-free water. Primers
(Table 1)for
Capn3,
Tmsb4x,
CR536618,
1700065I16Rik,
Sgne1, Stmn1, and
Actb were ordered and purchased from metabion International AG (Martinsried, Germany), and analysis was performed with a sequence detection system (ABI PRISM 7000; Applied Biosystems, Foster City, CA) under the following conditions: 95°C for 15 minutes, followed by 40 cycles of 95°C for 15 seconds and 60°C for 1 minute. For relative quantitation of expression of each gene between the C3H strain and its
O377 mutant line, the comparative C
T method (ΔΔC
T) was used. ΔC
T = C
T (gene of interest) − C
T (
Actb). This value was calculated for each sample, where C
T = cycle number threshold. The comparative ΔΔC
T calculation involved finding the difference between the ΔC
T of each sample and the mean ΔC
T for the C3H strain. These values were then transformed to absolute values using the formula: Comparative expression level = 2
−ΔΔCT .