Fischer-344 rats aged 6, 12, 18, and 24 months (n = 3 per group) were purchased from Harlan Sprague-Dawley (Indianapolis, IN) from a colony subsidized by the National Institute of Aging. Animals were treated in accordance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research. Each animal was humanely killed with an overdose of sodium pentobarbital. Before enucleation, the superior pole of each cornea was marked at the corneoscleral limbus with an indelible pen. Whole globes were immersion-fixed for 15 minutes at room temperature (RT) in 4% paraformaldehyde–0.2% picric acid in 0.1 M phosphate-buffered saline (PBS). The anterior segment was then removed with a razor blade, and the cornea and approximately 1 mm of attached scleral rim were isolated and returned to the fixative solution for an additional 45 minutes. The corneas were then stored in 0.1 M PBS with 30% sucrose for 24 to 48 hours.
Each cornea was mounted briefly on a dome-shaped post that approximated the radius of curvature of the rat cornea to facilitate subsequent cutting with a single-edge razor blade into standardized inferonasal, inferotemporal, superonasal, and superotemporal quadrants. The quadrants were then permeabilized by overnight incubation at 37°C in 0.1% EDTA (Sigma-Aldrich, Inc., St. Louis, MO) and 0.01% hyaluronidase (type IV-S, product no. H4272; Sigma-Aldrich) in 0.1 M PBS, pH 5.3.
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Tissues were rinsed for 90 minutes in PBS with 0.3% Triton X-100 (PBS-TX) and were blocked at RT for 2 hours in PBS-TX containing 1% bovine serum albumin (BSA; Sigma-Aldrich). Inferotemporal and inferonasal quadrants were incubated overnight at room temperature in a mouse monoclonal antibody against neuronal class III β-tubulin (TuJ1, 1:500; Covance Research Products, Berkeley, CA). The neurotubulin antibody recognizes a cytoskeletal component expressed in all peripheral axons, regardless of phenotype, and was used here as a “pan-neuronal” marker for corneal nerves. Superotemporal and superonasal quadrants were not examined in the present study but will be processed separately in a future investigation of age-related changes in corneal peptidergic innervation.
The following morning, the quadrants were rinsed for 90 minutes in PBS-TX, followed by a 2-hour incubation at RT in secondary antibody (horse, anti-mouse IgG, rat-absorbed, 1:200; Vector Laboratories, Burlingame, CA). After a 90-minute rinse in PBS-TX, the tissues were incubated for 2 hours at RT in avidin-biotin-horseradish peroxidase complex (ABC reagent; Vector Laboratories), rinsed for 45 minutes in PBS, incubated for 8 minutes at RT in 0.1% diaminobenzidine (Sigma-Aldrich), and finally washed three times in PBS and twice in distilled water. The quadrants were then mounted onto subbed slides, air dried overnight, dehydrated in graded alcohols, cleared in xylene, and coverslipped with mounting medium (Permount; Biomeda, Foster City, CA).