Retinal organ cultures were performed according to previously described protocols with some modification.
43 44 Briefly, Sprague-Dawley (SD) rats were killed at postnatal day (P) 14, and their eyes were enucleated. The anterior segment, vitreous body, and sclera were removed, and the retina was mounted immediately on 0.4-μM inserts (Millicell-CM; Millipore, Billerica, MA) with the photoreceptor side down. Retinal explants were cultured in 1.1 mL medium (Neuroabasal-A; Invitrogen, Carlsbad, CA) supplemented with 2% B27, 2% fetal bovine serum (FBS), 1 mM glutamine, and antibiotics. Considering the possible affects of ex vivo culture conditions on NFκB activation that may interfere with the glutamate-induced response, pilot experiments with the aid of electrophoretic mobility shift assay (EMSA) were performed to compare NFκB binding activation in retinas without glutamate treatment at 0, 2, 4, 6, and 20 hours in culture. Because dissection took only 1 to 2 minutes, retinal explants used immediately after dissection (0 hour in culture) for protein extraction should represent the basal level of NFκB in the in vivo condition. No significant change in NFκB activity was observed until 4 hours later in culture (data not shown). Therefore, retinal explants were treated immediately after dissection, with or without glutamate (2 or 5 mM) for 2 to 4 hours, in the presence or absence of CaMKII inhibitor AIP (20 μM; Calbiochem, La Jolla, CA), Ca
2+ chelator EGTA (2 mM), NMDA-receptor antagonist memantine (20–100 μM; Tocris Cookson Inc., Ellisville, MO), or APMA-KA receptor antagonist DNQX (50 μM; Tocris Cookson Inc.). During treatment, retinal explants were maintained at 37°C in a humidified environment of 5% CO
2 and 95% air. The concentrations of glutamate were selected based on a review of the literature
45 46 and our pilot data (not shown) to overstimulate glutamate receptors. Six retinas were used at each time point for each condition. At the indicated times, retinal explants were fixed for sectioning and immunohistochemistry or processed on ice for nuclear and cytoplasmic protein extraction.