Zymography is used to analyze the ability of MMP-2 and -9 to degrade gelatin and MMP-1 and -3 to degrade casein. Zymography techniques for MMPs other than MMP-1, -2, -3, and -9 have not been described in studies of ocular tissue. Gelatin (0.1%) or β-casein (0.1%) was mixed into liquid acrylamide when casting polyacrylamide gels. Concentrated conditioned medium was mixed with 2× Tris-glycine-SDS zymography sample buffer (125 mM Tris-HCl [pH 6.8], 4% SDS, 20% glycerol, 0.01% bromophenol blue) at a 1:10 ratio and was loaded into 10% SDS-polyacrylamide gels. The samples were electrophoresed at 130 V in tank buffer. The gels were washed at room temperature with 2.5% Triton X-100 (renaturing buffer), then transferred to development buffer (50 mM Tris-HCl [pH 7.5], 0.2 M NaCl, 5 mM CaCl2, and 0.05% NaN3) overnight at 37°C. The resultant gels were stained with 0.1% Coomassie brilliant blue G-250 (Bio-Rad, Hercules, CA) solution for at least 3 hours, then destained with fixing/destaining solution until clear bands were visible and contrasted well with the blue background of the nondegraded substrate. The gels were scanned and analyzed for relative densities with the infrared imaging system (Odyssey; Li-Cor). All the MMPs were identified based on their molecular weights resolved by zymography and were confirmed by purified MMP-1, -2, -3, and -9 (Chemicon, Temecula, CA) as positive controls.