Although these results are interesting, there are some limitations to our study. Although our associations with HRT and AMD and the interaction between
ARMS2 and HRT remain significant after an FDR correction (q* = 0.20)
61 for the number of variables and genes examined, further studies are necessary to replicate and extend these findings in independent cohorts. Another factor that may affect our findings is the potential bias caused by our case group's being somewhat younger than our control group. To address this potential bias, we included a term in the multivariate model to adjust for confounding by age. This adjustment, however, may not take into account other unobserved factors such as a different medical awareness of the use of HRT and/or cycles of popularity of BCP by age and case/control status. As a result, we also performed analyses in which our data were divided into quartiles (<60, 60–69, 70–79, 80+; results not shown) for the multivariate analyses of BCP and HRT with adjustment for smoking status. In these analyses, we observed that the protective effect was consistent across age ranges for both HRT and BCP, although the significance of the effect was dependent on the number of samples present for that age quartile. Examination of these factors would be beyond the scope of the present study but they are worth examining in follow-up studies of HRT and BCP, to demonstrate that the protective direction of the effects of HRT and BCP was independent of age quartile. In the past, our group has observed an association between
ARMS2 A69S and smoking history.
37 We directly tested all the
ARMS2 SNPs for interaction with smoking and did not observe a statistically significant interaction between the
ARMS2 SNPs that interacted with HRT and smoking. Therefore, we did not adjust for a smoking interaction in our models. One factor that may explain why we observed the association in variants in the 5′ region of
ARMS2 but not at the previously observed
ARMS2 variant rs10490924 may be the SNPs tagging variants upstream in the
HTRA1 gene located approximately 6.1 kb downstream of
ARMS2. HTRA1 has been associated with AMD in a white and Hong Kong Chinese cohort.
62,63 It may be that we are observing associations with
ARMS2 due to a functional variant in
HTRA1. We did not observe an interaction with the previously associated
HTRA1 SNP rs11200638; however, further studies examining the relationship between these
ARMS2 variants and variants in
HTRA1 should be conducted.