In vivo imaging allows serial quantification of actual RGC numbers over time, based on the ability to identify individual RGC somas retrograde-labeled with Alexa Fluor 488-dextran. Relative numbers of fluorescent RGC somas in defined areas of the retina were quantitated by serial imaging before and after optic nerve transection. A decrease in the number of RGCs was observed (
Figs. 8A–D). In the first 5 days, the number of RGC somas decreased from 100% to 83% ± 12% (
P = 0.023). The most rapid decrease in the number of RGC somas was between 5 and 7 days after optic nerve transection (83% ± 12% to 47% ± 16%;
P < 0.001;
n = 5). The proportion surviving at 14 days was 24% ± 10% (
P < 0.001;
Fig. 8E). To assess the possibility that microglial phagocytosis of labeled RGCs was confounding the RGC soma counts, retinas were poststained with rhodamine-labeled GSL-I, a lectin that binds to microglia. Fourteen days after optic nerve transection, 3.3% ± 1.2% of the cells that were positive for Alexa Fluor 488-dextran were also positive for GSL-I (
Figs. 9A–D). In nonaxotomized retinas, Alexa Fluor 488-dextran–positive cells were preserved, and few GSL-I–positive cells were observed (
Figs. 9D–F).