Mice were killed and perfusion fixed using 2% paraformaldehyde, as previously described.
19 The retina was dissected free and cut into quadrants, as documented.
19 Tissue pieces were washed in PBS, incubated in 20 mM EDTA tetrasodium at 37°C for 30 minutes, and incubated with a 0.2% solution of Triton-X in PBS with 2% BSA at room temperature for 30 minutes to assist antibody penetration. Further washes with PBS were followed by overnight incubation (4°C) with a range of monoclonal antibodies, including anti-MHC class II 1:200 (M5/114; BD PharMingen, San Jose, CA), anti-CD45 1:100 (Serotec, Raleigh, NC), anti-CD11b 1:100 (BD PharMingen), anti-GFAP 1:200 (glial fibrillary acidic protein) for glial tissue (Serotec), anti-NeuN 1:200 (neuron-specific protein; stains predominantly ganglion cells in the retina; Chemicon, Temecula, CA),
20 and isotype controls 1:100 (IgG2a and IgG2b; BD PharMingen). Tissues were then treated with biotinylated goat anti-rat IgG 1:200 (Amersham Biosciences, Piscataway, NJ) at room temperature for 60 minutes, washed with PBS, and incubated with streptavidin-Cy3 1:250 (Jackson ImmunoResearch Laboratories, West Grove, PA) at room temperature for 60 minutes. 4′,6 -Diamidine-2′-phenylindole dihydrochloride (DAPI) 1:250 (Roche Diagnostics, Mannheim, Germany) was added at room temperature for 7 minutes as a nuclear stain. Stained wholemount tissues were then mounted onto slides (retinas were mounted with the vitreous side face up) using an aqueous mounting medium (Immunomount; Thermo Shandon, Waltham, MA) and were coverslipped.